HHsearch alignment for GI: 254780129 and conserved domain: COG1061

>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.92  E-value=2.4e-24  Score=158.96  Aligned_cols=161  Identities=17%  Similarity=0.229  Sum_probs=108.7

Q ss_pred             CCCCCHHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf             87134899999999996----79819996899988999999999997408994899723310137889999851553460
Q gi|254780129|r    2 HLVLKPHQIVMVNWLLS----HDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDM   77 (220)
Q Consensus         2 ~~~Lrp~Q~~a~~~~~~----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~   77 (220)
T Consensus        34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~  108 (442)
T COG1061          34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLN-D  108 (442)
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHHHHHHCCCC-C
T ss_conf             788859999999999962225786799967999889999999998269----88999782999999999999734886-7


Q ss_pred             EEEEEECCCCCCCCCCCCCCCEEEECHHHHHCCC-CCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf             6998611210112234567662786566731000-000002472000025122013654332036999999985137987
Q gi|254780129|r   78 TVSSLIGSERQRIKALNTPAHLYIINFENIPWLV-KMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKR  156 (220)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~  156 (220)
T Consensus       109 ~~g~~~~~~~~~~----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-------~~~~~~~~~--~~~~  174 (442)
T COG1061         109 EIGIYGGGEKELE----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-------SYRRILELL--SAAY  174 (442)
T ss_pred             CCCEECCCCCCCC----C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHH--HCCC
T ss_conf             6603368723357----7-748999838976415555403566675999752457847-------799999975--1031


Q ss_pred             -EEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf             -9983165324888999999998288
Q gi|254780129|r  157 -FIELTGTPSPNGLIDLWGQIWFLDK  181 (220)
Q Consensus       157 -~l~LTgTPi~n~~~el~~ll~~l~p  181 (220)
T Consensus       175 ~~LGLTATp~R~D~~~~~~l~~~~g~  200 (442)
T COG1061         175 PRLGLTATPEREDGGRIGDLFDLIGP  200 (442)
T ss_pred             EEEEEECCCCCCCCCCHHHHHHHCCC
T ss_conf             04677148724487752487740575