HHsearch alignment for GI: 254780129 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=99.92 E-value=2.4e-24 Score=158.96 Aligned_cols=161 Identities=17% Similarity=0.229 Sum_probs=108.7
Q ss_pred CCCCCHHHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 87134899999999996----79819996899988999999999997408994899723310137889999851553460
Q gi|254780129|r 2 HLVLKPHQIVMVNWLLS----HDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDM 77 (220)
Q Consensus 2 ~~~Lrp~Q~~a~~~~~~----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~ 77 (220)
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~----~~Lvlv~~~~L~~Qw~~~~~~~~~~~-~ 108 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKR----STLVLVPTKELLDQWAEALKKFLLLN-D 108 (442)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHHHHHHCCCC-C
T ss_conf 788859999999999962225786799967999889999999998269----88999782999999999999734886-7
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEECHHHHHCCC-CCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCE
Q ss_conf 6998611210112234567662786566731000-000002472000025122013654332036999999985137987
Q gi|254780129|r 78 TVSSLIGSERQRIKALNTPAHLYIINFENIPWLV-KMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKR 156 (220)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~-~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~ 156 (220)
T Consensus 109 ~~g~~~~~~~~~~----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-------~~~~~~~~~--~~~~ 174 (442)
T COG1061 109 EIGIYGGGEKELE----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-------SYRRILELL--SAAY 174 (442)
T ss_pred CCCEECCCCCCCC----C-CCEEEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCCCH-------HHHHHHHHH--HCCC
T ss_conf 6603368723357----7-748999838976415555403566675999752457847-------799999975--1031
Q ss_pred -EEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf -9983165324888999999998288
Q gi|254780129|r 157 -FIELTGTPSPNGLIDLWGQIWFLDK 181 (220)
Q Consensus 157 -~l~LTgTPi~n~~~el~~ll~~l~p 181 (220)
T Consensus 175 ~~LGLTATp~R~D~~~~~~l~~~~g~ 200 (442)
T COG1061 175 PRLGLTATPEREDGGRIGDLFDLIGP 200 (442)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHCCC
T ss_conf 04677148724487752487740575