HHsearch alignment for GI: 254780129 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=99.59 E-value=3.5e-14 Score=100.59 Aligned_cols=157 Identities=18% Similarity=0.272 Sum_probs=103.6
Q ss_pred CCCHHHHHHHHHHHH---C---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHH-HCCCCC
Q ss_conf 134899999999996---7---981999689998899999999999740899489972331013788999985-155346
Q gi|254780129|r 4 VLKPHQIVMVNWLLS---H---DRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVER-WSAFSD 76 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~---~---~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~-~~~~~~ 76 (220)
T Consensus 594 eET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkA-V~~GKQVAvLVPTTlLA~QHy~tFkeRF~~-fP 671 (1139)
T COG1197 594 EETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKA-VMDGKQVAVLVPTTLLAQQHYETFKERFAG-FP 671 (1139)
T ss_pred CCCHHHHHHHHHHHHHHCCCCCCHHEEECCCCCCHHHHHHHHHHHH-HCCCCEEEEECCCHHHHHHHHHHHHHHHCC-CC
T ss_conf 5787899999999988606986610256576875999999999998-637974999926078689989999987338-98
Q ss_pred CEEEEEECCC--CCC---CCC-CCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 0699861121--011---223-4567662786566731000000002472000025122013654332036999999985
Q gi|254780129|r 77 MTVSSLIGSE--RQR---IKA-LNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA 150 (220)
Q Consensus 77 ~~~~~~~~~~--~~~---~~~-~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~ 150 (220)
T Consensus 672 V~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~----FkdLGLlIIDEEqRF-------GVk~KEkLK~Lr 740 (1139)
T COG1197 672 VRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK----FKDLGLLIIDEEQRF-------GVKHKEKLKELR 740 (1139)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCCCE----EECCCEEEEECHHHC-------CCCHHHHHHHHH
T ss_conf 258886055788999999999856984589963176478967----704764897443532-------711789998775
Q ss_pred HCCCCEEEEECCCCCCCCH-HHHHHH
Q ss_conf 1379879983165324888-999999
Q gi|254780129|r 151 FSKVKRFIELTGTPSPNGL-IDLWGQ 175 (220)
Q Consensus 151 ~~~~~~~l~LTgTPi~n~~-~el~~l 175 (220)
T Consensus 741 --~~VDvLTLSATPIPRTL~Msm~Gi 764 (1139)
T COG1197 741 --ANVDVLTLSATPIPRTLNMSLSGI 764 (1139)
T ss_pred --CCCCEEEEECCCCCCHHHHHHHCC
T ss_conf --057289741788754477777443