HHsearch alignment for GI: 254780129 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=99.78 E-value=2.2e-18 Score=124.75 Aligned_cols=166 Identities=20% Similarity=0.325 Sum_probs=120.7
Q ss_pred CCCCCCHHHHHHHHHHHHC------CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 9871348999999999967------9819996899988999999999997408994899723310137889999851553
Q gi|254780129|r 1 MHLVLKPHQIVMVNWLLSH------DRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAF 74 (220)
Q Consensus 1 ~~~~Lrp~Q~~a~~~~~~~------~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~ 74 (220)
T Consensus 259 LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G-~Q~ALMAPTEILA~QH~~~~~~~l~~ 337 (677)
T COG1200 259 LPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAG-YQAALMAPTEILAEQHYESLRKWLEP 337 (677)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 89976789999999998664486666787526767778999999999998728-81688663799999999999987665
Q ss_pred CCCEEEEEECCCCCC-----CC-CCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 460699861121011-----22-345676627865667310000000024720000251220136543320369999999
Q gi|254780129|r 75 SDMTVSSLIGSERQR-----IK-ALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGK 148 (220)
Q Consensus 75 ~~~~~~~~~~~~~~~-----~~-~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~ 148 (220)
T Consensus 338 ~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd----~V~F~~LgLVIiDEQHRF-------GV~QR~~L~~ 406 (677)
T COG1200 338 LGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD----KVEFHNLGLVIIDEQHRF-------GVHQRLALRE 406 (677)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHHC----CEEECCEEEEEEECCCCC-------CHHHHHHHHH
T ss_conf 19748986446650679999998747998979972212204----504420238997252102-------2999999997
Q ss_pred HHHCC-CCEEEEECCCCCCCCH-HHHHHHHH--HHC
Q ss_conf 85137-9879983165324888-99999999--828
Q gi|254780129|r 149 VAFSK-VKRFIELTGTPSPNGL-IDLWGQIW--FLD 180 (220)
Q Consensus 149 ~~~~~-~~~~l~LTgTPi~n~~-~el~~ll~--~l~ 180 (220)
T Consensus 407 K--G~~~Ph~LvMTATPIPRTLAlt~fgDldvS~Id 440 (677)
T COG1200 407 K--GEQNPHVLVMTATPIPRTLALTAFGDLDVSIID 440 (677)
T ss_pred H--CCCCCCEEEEECCCCHHHHHHHHHCCCCCHHHC
T ss_conf 3--789996799957985078898886146301112