HHsearch alignment for GI: 254780129 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=99.40 E-value=4.4e-12 Score=88.57 Aligned_cols=171 Identities=21% Similarity=0.230 Sum_probs=119.3
Q ss_pred CCCCHHHHHHHHH-HHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 7134899999999-996798199968999889999-99999997408994899723310137889999851553460699
Q gi|254780129|r 3 LVLKPHQIVMVNW-LLSHDRCALWASMGSGKTVSV-LFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVS 80 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~-~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~ 80 (220)
T Consensus 215 ~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~-l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglkva 293 (830)
T COG1202 215 EELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRL-LSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVA 293 (830)
T ss_pred CEECCHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHCCHHH-HHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEE
T ss_conf 4430234655661440577349994057775147776373878-837872899731687631118999998650166278
Q ss_pred EEECCCC--CCC----CCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCC-CCCCCHHHHHHHHHHHHHCC
Q ss_conf 8611210--112----2345676627865667310000000024720000251220136-54332036999999985137
Q gi|254780129|r 81 SLIGSER--QRI----KALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKS-FRTHQGTKQTRALGKVAFSK 153 (220)
Q Consensus 81 ~~~~~~~--~~~----~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn-~~~~~~~k~~k~l~~~~~~~ 153 (220)
T Consensus 294 irVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~--~ 371 (830)
T COG1202 294 IRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLF--P 371 (830)
T ss_pred EEECHHHHCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCCCCCCCCEEEEEEEEECCCHHCCCCHHHHHHHHHHHC--C
T ss_conf 88423452246775356899877679861110789987078555443599650120440101632352899999867--7
Q ss_pred CCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 9879983165324888999999998
Q gi|254780129|r 154 VKRFIELTGTPSPNGLIDLWGQIWF 178 (220)
Q Consensus 154 ~~~~l~LTgTPi~n~~~el~~ll~~ 178 (220)
T Consensus 372 ~AQ~i~LSATV--gNp~elA~~l~a 394 (830)
T COG1202 372 GAQFIYLSATV--GNPEELAKKLGA 394 (830)
T ss_pred CCEEEEEEEEC--CCHHHHHHHHCC
T ss_conf 77499987433--886999988387