HHsearch alignment for GI: 254780129 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=99.75 E-value=1.5e-17 Score=119.97 Aligned_cols=168 Identities=20% Similarity=0.138 Sum_probs=112.4
Q ss_pred CCCHHHHHHHHHHH-HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE
Q ss_conf 13489999999999-67981999689998899999999999740899489972331013788999985155346069986
Q gi|254780129|r 4 VLKPHQIVMVNWLL-SHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSL 82 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~-~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~ 82 (220)
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~-~~~GirV~~~ 109 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRL-EELGIRVGIS 109 (766)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHH-HHCCCEEEEE
T ss_conf 755789987411125798679976788866999999999999855983899907599999999986668-8659779996
Q ss_pred ECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCC-CCCCCCCCCCCHHHCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 112101122345676627865667310000000-0247200002512201365-43320369999999851379879983
Q gi|254780129|r 83 IGSERQRIKALNTPAHLYIINFENIPWLVKMKL-DHWDFATIVVDESTKLKSF-RTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~~~~iIiDEaH~~kn~-~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 110 TgD~~~~~-~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~--~~~rivgL 186 (766)
T COG1204 110 TGDYDLDD-ERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLN--ELIRIVGL 186 (766)
T ss_pred CCCCCCCH-HHHCCCCEEEECHHHHHHHHHCCCCHHHCCCEEEEEEEEECCCCCCCCEEHHHHHHHHHHC--CCEEEEEE
T ss_conf 48865553-3414588799746786676506753334016899942101487565864022798888527--55179887
Q ss_pred CCCCCCCCHHHHHHHHH
Q ss_conf 16532488899999999
Q gi|254780129|r 161 TGTPSPNGLIDLWGQIW 177 (220)
Q Consensus 161 TgTPi~n~~~el~~ll~ 177 (220)
T Consensus 187 SAT-lpN-~~evA~wL~ 201 (766)
T COG1204 187 SAT-LPN-AEEVADWLN 201 (766)
T ss_pred EEE-CCC-HHHHHHHHC
T ss_conf 311-688-899999858