HHsearch alignment for GI: 254780129 and conserved domain: COG1419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion].
Probab=95.40 E-value=0.18 Score=27.55 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=66.5
Q ss_pred CCC-EEEECCCCCHHHHHHHHHH-HHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 981-9996899988999999999-99740899489972331013788999985155346069986112101122345676
Q gi|254780129|r 20 DRC-ALWASMGSGKTVSVLFALS-TIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPA 97 (220)
Q Consensus 20 ~~~-~l~~~~G~GKT~~ai~~~~-~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (220)
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDt-YRIGA~EQLk~Ya~im~vp~~----------------- 264 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDT-YRIGAVEQLKTYADIMGVPLE----------------- 264 (407)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC-CHHHHHHHHHHHHHHHCCCEE-----------------
T ss_conf 85799989988758879999999997532576068997144-115289999999998699559-----------------
Q ss_pred CEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHH
Q ss_conf 62786566731000000002472000025122013654332036999999985137987998316532488899999999
Q gi|254780129|r 98 HLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIW 177 (220)
Q Consensus 98 ~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~ll~ 177 (220)
T Consensus 265 --vv~~~~el~~ai---~~l~~~d~ILVDTaGr--s~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f~ 336 (407)
T COG1419 265 --VVYSPKELAEAI---EALRDCDVILVDTAGR--SQYDKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQFS 336 (407)
T ss_pred --EECCHHHHHHHH---HHHHCCCEEEEECCCC--CCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf --963999999999---9853188899968998--833789999999997035-66217999845764688999999724
Q ss_pred HHCC
Q ss_conf 8288
Q gi|254780129|r 178 FLDK 181 (220)
Q Consensus 178 ~l~p 181 (220)
T Consensus 337 ~~~i 340 (407)
T COG1419 337 LFPI 340 (407)
T ss_pred CCCC
T ss_conf 5886