HHsearch alignment for GI: 254780129 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=98.79 E-value=2.2e-07 Score=61.51 Aligned_cols=146 Identities=21% Similarity=0.264 Sum_probs=86.8
Q ss_pred CCCCHHHHHHHHHHH----HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCE
Q ss_conf 713489999999999----6798199968999889999999999974089948997233101378899998515534606
Q gi|254780129|r 3 LVLKPHQIVMVNWLL----SHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMT 78 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~----~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~ 78 (220)
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~-G~~vciASPRvDVclEl~~Rlk~--aF~~~~ 172 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQ-GGRVCIASPRVDVCLELYPRLKQ--AFSNCD 172 (441)
T ss_pred CCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHC-CCEEEEECCCCCCHHHHHHHHHH--HHCCCC
T ss_conf 532724789999999998715768999742798510169999999965-98699846861011777899997--621498
Q ss_pred EEEEECCCCCCCCCCCCCCCEEEE-CHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 998611210112234567662786-5667310000000024720000251220136543320369999999851379879
Q gi|254780129|r 79 VSSLIGSERQRIKALNTPAHLYII-NFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRF 157 (220)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~i~-~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~ 157 (220)
T Consensus 173 I~~Lyg~S~~~fr-----~plvVaTtHQLlr-Fk~------aFD~liIDEVDAF--P~~~-d~~L~~Av~~ark~~-g~~ 236 (441)
T COG4098 173 IDLLYGDSDSYFR-----APLVVATTHQLLR-FKQ------AFDLLIIDEVDAF--PFSD-DQSLQYAVKKARKKE-GAT 236 (441)
T ss_pred EEEEECCCCHHCC-----CCEEEEEHHHHHH-HHH------HCCEEEEECCCCC--CCCC-CHHHHHHHHHHHCCC-CCE
T ss_conf 6667258713133-----4479976688888-886------4338998302456--5667-888999999751236-736
Q ss_pred EEECCCCCCC
Q ss_conf 9831653248
Q gi|254780129|r 158 IELTGTPSPN 167 (220)
Q Consensus 158 l~LTgTPi~n 167 (220)
T Consensus 237 IylTATp~k~ 246 (441)
T COG4098 237 IYLTATPTKK 246 (441)
T ss_pred EEEECCCHHH
T ss_conf 9996488078