HHsearch alignment for GI: 254780129 and conserved domain: COG4581
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair].
Probab=99.47 E-value=1e-12 Score=92.14 Aligned_cols=157 Identities=18% Similarity=0.237 Sum_probs=106.2
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH-HHHCCCCCCEEEE
Q ss_conf 713489999999999679819996899988999999999997408994899723310137889999-8515534606998
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEV-ERWSAFSDMTVSS 81 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~-~~~~~~~~~~~~~ 81 (220)
T Consensus 118 F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~-~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vGL 195 (1041)
T COG4581 118 FELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRD-GQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVGL 195 (1041)
T ss_pred CCCCHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHC-CCCEEECCCHHHHHHHHHHHHHHHHHHH-HHHCCC
T ss_conf 89678999999998479957997337898555999999999871-8944861630664206799999986005-654040
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 611210112234567662786566731000000-0024720000251220136543320369999999851379879983
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 196 ~TGDv-----~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~e--RG~VWEE~I--i~lP~~v~~v~L 266 (1041)
T COG4581 196 MTGDV-----SINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRE--RGVVWEEVI--ILLPDHVRFVFL 266 (1041)
T ss_pred EECCE-----EECCCCCEEEEEHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCCC--CCHHHHHHH--HHCCCCCCEEEE
T ss_conf 10543-----427999668860999999862586101353068887666504632--212578999--866777768999
Q ss_pred CCCCCCCCHHHH
Q ss_conf 165324888999
Q gi|254780129|r 161 TGTPSPNGLIDL 172 (220)
Q Consensus 161 TgTPi~n~~~el 172 (220)
T Consensus 267 SAT-v~N-~~EF 276 (1041)
T COG4581 267 SAT-VPN-AEEF 276 (1041)
T ss_pred ECC-CCC-HHHH
T ss_conf 678-898-7999