HHsearch alignment for GI: 254780129 and conserved domain: COG4626
>COG4626 Phage terminase-like protein, large subunit [General function prediction only].
Probab=96.23 E-value=0.064 Score=30.17 Aligned_cols=161 Identities=13% Similarity=0.033 Sum_probs=71.9
Q ss_pred CCCCHHHHHHHHHHHH--C--------CCCEEEECCCCCHHHHHH--HHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHH
Q ss_conf 7134899999999996--7--------981999689998899999--999999-74089948997233101378899998
Q gi|254780129|r 3 LVLKPHQIVMVNWLLS--H--------DRCALWASMGSGKTVSVL--FALSTI-KILDPRPVLIIAPLRVAQYVWKDEVE 69 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~--~--------~~~~l~~~~G~GKT~~ai--~~~~~~-~~~~~~~~LIi~P~s~~~~~W~~e~~ 69 (220)
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~F~~ar 139 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANSFNPAR 139 (546)
T ss_pred CCCCCHHHHHHHHHHHEEECCCCEEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
T ss_conf 34351899999987603505787068889999974578557899999999987653047608998342899988768999
Q ss_pred HHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEECHHH---HHC--CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHH
Q ss_conf 5155346069986112101122345676627865667---310--00000002472000025122013654332036999
Q gi|254780129|r 70 RWSAFSDMTVSSLIGSERQRIKALNTPAHLYIINFEN---IPW--LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTR 144 (220)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~---l~~--~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k 144 (220)
T Consensus 140 -~mv~~~~---------~l~~~~~~~~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~----~~~~~ 205 (546)
T COG4626 140 -DMVKRDD---------DLRDLCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQE----DMYSE 205 (546)
T ss_pred -HHHHHCC---------CHHHHCCCCCCEEEEEECCCCEEEEEHHCCCCCCCCCCCCEEEEEHHHHHCCHH----HHHHH
T ss_conf -9987372---------133320654540489861551113301048875567876548876375416789----99999
Q ss_pred HHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHHH
Q ss_conf 999985137987998316--532488899999999
Q gi|254780129|r 145 ALGKVAFSKVKRFIELTG--TPSPNGLIDLWGQIW 177 (220)
Q Consensus 145 ~l~~~~~~~~~~~l~LTg--TPi~n~~~el~~ll~ 177 (220)
T Consensus 206 ~~~g~~ar~~~l~~~ITT~g~~~~g~~~q~~~y~k 240 (546)
T COG4626 206 AKGGLGARPEGLVVYITTSGDPPAGVFKQKLQYAK 240 (546)
T ss_pred HHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf 97420157676399996689887418999999999