HHsearch alignment for GI: 254780129 and conserved domain: PRK00254
>PRK00254 ski2-like helicase; Provisional.
Probab=99.79 E-value=3.2e-18 Score=123.84 Aligned_cols=162 Identities=18% Similarity=0.149 Sum_probs=112.1
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEECCCCCHHHHHHHHH-HHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 134899999999-9967981999689998899999999-99974089948997233101378899998515534606998
Q gi|254780129|r 4 VLKPHQIVMVNW-LLSHDRCALWASMGSGKTVSVLFAL-STIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 4 ~Lrp~Q~~a~~~-~~~~~~~~l~~~~G~GKT~~ai~~~-~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 23 ~l~p~Q~e~l~~g~~~g~NllvsaPT~sGKTlvAElail~~~l-~~~~k~iyi~P~kALa~EK~~~f~~~~-~~g~~V~~ 100 (717)
T PRK00254 23 ELYPPQAEALTSGVLEGKNLLIAIPTASGKTLIAEIAMVNKLL-REGGKAVYLVPLKALAEEKFREFKDWE-VLGLRVAM 100 (717)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH-HCCCEEEEECCHHHHHHHHHHHHHHHH-HCCCEEEE
T ss_conf 2689999998742336981899899887489999999999998-529929999267999999999998777-44988989
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHCCCCCCC-CCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6112101122345676627865667310000000-024720000251220136543320369999999851379879983
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPWLVKMKL-DHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~~-~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 101 ~tGd~~~~~~-~l~~~dIiV~T~Ek~dsl~r~~~~~l~~i~lvViDEiH~igD~--~RG~~lE~~l~~l~--~~~qiIgL 175 (717)
T PRK00254 101 ATGDYDSKDE-WLGKYDIIIATAEKFDSLLRHGSSWIKDVKLLVADEIHLIGSR--DRGATLEFILTHML--GRAQIIGL 175 (717)
T ss_pred EECCCCCCCC-CCCCCCEEEECHHHHHHHHHCCHHHHHCCCEEEEECEEECCCC--CCHHHHHHHHHHHH--CCCEEEEE
T ss_conf 7489888701-0468999998889999999716256532698999760788898--74099999999510--03669999
Q ss_pred CCCCCCCCHHHHHH
Q ss_conf 16532488899999
Q gi|254780129|r 161 TGTPSPNGLIDLWG 174 (220)
Q Consensus 161 TgTPi~n~~~el~~ 174 (220)
T Consensus 176 SAT-i~-N~~~la~ 187 (717)
T PRK00254 176 SAT-IG-NPEELAE 187 (717)
T ss_pred EEE-CC-CHHHHHH
T ss_conf 633-49-9899999