HHsearch alignment for GI: 254780129 and conserved domain: PRK02362
>PRK02362 ski2-like helicase; Provisional.
Probab=99.78 E-value=9.1e-18 Score=121.18 Aligned_cols=166 Identities=23% Similarity=0.174 Sum_probs=112.5
Q ss_pred CCCHHHHHHHHH-HHHCCCCEEEECCCCCHHHHHHH-HHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 134899999999-99679819996899988999999-9999974089948997233101378899998515534606998
Q gi|254780129|r 4 VLKPHQIVMVNW-LLSHDRCALWASMGSGKTVSVLF-ALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 4 ~Lrp~Q~~a~~~-~~~~~~~~l~~~~G~GKT~~ai~-~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 23 ~Lyp~Q~eal~~gl~~g~NlvvsaPTgsGKTlvAElail~~l~--~g~k~vYi~P~kALa~EK~~~~~~~~-~~gi~V~~ 99 (736)
T PRK02362 23 ELYPPQAEAVEAGLLEGKNLLAAIPTASGKTLLAELAMLKAIA--EGGKALYIVPLRALASEKFEEFSEFS-ELGLRVGI 99 (736)
T ss_pred CCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHH--HCCEEEEECCHHHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 5789999999864356981899799998589999999999998--39979998587999999999999874-57998999
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHC-CCCEEEE
Q ss_conf 611210112234567662786566731000000-00247200002512201365433203699999998513-7987998
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFS-KVKRFIE 159 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~-~~~~~l~ 159 (220)
T Consensus 100 ~tGd~~~~~~~-l~~~dIiV~T~EK~dsl~r~~~~~l~~v~lVViDEiHli~d~--~RG~~lE~~lskl~~~~~~iqiIg 176 (736)
T PRK02362 100 STGDYDRRDEY-LGRNDIIVATSEKTDSLLRNGAPWIDDISCVVADEVHLIDSP--NRGPTLEVTLAKLRRLNPDMQVIA 176 (736)
T ss_pred EECCCCCCHHH-CCCCCEEEECHHHHHHHHHCCCHHHHCCCEEEEECCEEECCC--CCHHHHHHHHHHHHHCCCCCEEEE
T ss_conf 80898878314-368999999979999998448167650898998176786688--724999999999973387743898
Q ss_pred ECCCCCCCCHHHHHHHHHHHC
Q ss_conf 316532488899999999828
Q gi|254780129|r 160 LTGTPSPNGLIDLWGQIWFLD 180 (220)
Q Consensus 160 LTgTPi~n~~~el~~ll~~l~ 180 (220)
T Consensus 177 LSAT-l~-N~~~l---a~WL~ 192 (736)
T PRK02362 177 LSAT-IG-NADEL---AAWLD 192 (736)
T ss_pred EECC-CC-CHHHH---HHHHC
T ss_conf 6245-58-99999---99838