HHsearch alignment for GI: 254780129 and conserved domain: PRK04537
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.59 E-value=7e-14 Score=98.87 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=110.3
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHH-HHHHHHHHC--------CCCCEEEEECCCCCHHHHHHHHHHHCCC
Q ss_conf 1348999999999967981999689998899999-999999740--------8994899723310137889999851553
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVL-FALSTIKIL--------DPRPVLIIAPLRVAQYVWKDEVERWSAF 74 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai-~~~~~~~~~--------~~~~~LIi~P~s~~~~~W~~e~~~~~~~ 74 (220)
T Consensus 31 ~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTLAYlLPiL~~Ll~~~~l~~~~~~~p~aLILvPTRELA~QI~~~~~~l~~~ 110 (574)
T PRK04537 31 RCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGAD 110 (574)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHHHHHHHHHCC
T ss_conf 89999999999995799889984898889999999999999837443457789961999779899999999999998645
Q ss_pred CCCEEEEEECCC--CCCCCCCCCCCCEEEECHHHHHCCCCC--CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 460699861121--011223456766278656673100000--0002472000025122013654332036999999985
Q gi|254780129|r 75 SDMTVSSLIGSE--RQRIKALNTPAHLYIINFENIPWLVKM--KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVA 150 (220)
Q Consensus 75 ~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~~~l~~~~~~--~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~ 150 (220)
T Consensus 111 ~~lr~~~l~GG~~~~~q~~~L~~g~dIVVaTPGRLld~L~~~~~~~L~~vk~LVLDEAD~LLd~gF~--~di~~IL~~lP 188 (574)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLGFI--KDIRFLLRRMP 188 (574)
T ss_pred CCCEEEEEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCH--HHHHHHHHHCC
T ss_conf 8977999979966889999873599989989899999998179865333158996273265428779--99999999666
Q ss_pred HCCCCEEEEECCCCCCCCHHHH
Q ss_conf 1379879983165324888999
Q gi|254780129|r 151 FSKVKRFIELTGTPSPNGLIDL 172 (220)
Q Consensus 151 ~~~~~~~l~LTgTPi~n~~~el 172 (220)
T Consensus 189 ~~~~rQ~iLfSAT-l~~~V~~l 209 (574)
T PRK04537 189 ERGTRQTLLFSAT-LSHRVLEL 209 (574)
T ss_pred CCCCCEEEEEEEC-CCHHHHHH
T ss_conf 5568558999832-77799999