HHsearch alignment for GI: 254780129 and conserved domain: PRK05563

>PRK05563 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.82  E-value=0.0003  Score=43.52  Aligned_cols=127  Identities=18%  Similarity=0.209  Sum_probs=60.3

Q ss_pred             CCCEEEE-CCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             9819996-899988999999999997408994899723310137889999851553460699861121011223456766
Q gi|254780129|r   20 DRCALWA-SMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAH   98 (220)
Q Consensus        20 ~~~~l~~-~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (220)
T Consensus        38 ~hayLf~GprG~GKTs~Ari~akalnc~~~~-~--~~pC~~C~~--C~~i~---~g~~~Dv~Eidaas~~g---------  100 (541)
T PRK05563         38 AHAYLFCGTRGTGKTSTAKIFAKAVNCLNPQ-D--GEPCNECEI--CKKIN---EGLLMDVIEIDAASNNG---------  100 (541)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHCCCCCC-C--CCCCCCCHH--HHHHH---CCCCCCEEEECCCCCCC---------
T ss_conf             2045303879958999999999995799988-8--985751488--99985---68988736624444478---------


Q ss_pred             EEEECHHHHHC---CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH-HHHHH
Q ss_conf             27865667310---000000024720000251220136543320369999999851379879983165324888-99999
Q gi|254780129|r   99 LYIINFENIPW---LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGL-IDLWG  174 (220)
Q Consensus        99 ~~i~~~~~l~~---~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~-~el~~  174 (220)
T Consensus       101 -----vd~iR~~~~~~~~~p~~~~~Kv~IiDEvhmls-------~~a~nallKtlEePp~~~~Filatte~~ki~~tI~S  168 (541)
T PRK05563        101 -----VDDIREIIENVKYPPQEGKYKVYIMDEVHMLS-------QGAVNAFLKTLEEPPSNVIFILATTDPQKLPITILS  168 (541)
T ss_pred             -----HHHHHHHHHHCEECCCCCCEEEEEEECCCCCC-------HHHHHHHHHHHHCCCCCCEEEEECCCCCCCCHHHHH
T ss_conf             -----89999999761048767870599997723389-------999999999985487775699976984427455674


Q ss_pred             H
Q ss_conf             9
Q gi|254780129|r  175 Q  175 (220)
Q Consensus       175 l  175 (220)
T Consensus       169 R  169 (541)
T PRK05563        169 R  169 (541)
T ss_pred             H
T ss_conf             2