HHsearch alignment for GI: 254780129 and conserved domain: PRK05580
>PRK05580 primosome assembly protein PriA; Validated.
Probab=99.02 E-value=8.8e-09 Score=69.60 Aligned_cols=156 Identities=19% Similarity=0.129 Sum_probs=98.9
Q ss_pred CCCCHHHHHHHHHHHHC---CCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 71348999999999967---981999689998899999999999740899489972331013788999985155346069
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSH---DRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTV 79 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~---~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 167 ~~L~~eQ~~a~~~i~~~~~~~~~LL~GvTGSGKTevYl~li~~~l~-~GkqvLiLvPEI~lt~q~~~rl~~~fg~---~v 242 (699)
T PRK05580 167 PTLNEEQAAALAAIRAAGGFSAFLLDGVTGSGKTEVYLQAIAEALA-QGKQALVLVPEIALTPQLLARFRARFGA---RV 242 (699)
T ss_pred CCCCHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHHHHHHHHCC---CE
T ss_conf 7889999999999985588871787478986079999999999997-3997899917678789999999987099---57
Q ss_pred EEEECC--CCCCC----CCCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHC--CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 986112--10112----2345676627865667310000000024720000251220--136543320369999999851
Q gi|254780129|r 80 SSLIGS--ERQRI----KALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTK--LKSFRTHQGTKQTRALGKVAF 151 (220)
Q Consensus 80 ~~~~~~--~~~~~----~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~--~kn~~~~~~~k~~k~l~~~~~ 151 (220)
T Consensus 243 ~v~HS~ls~~eR~~~w~~i~~G~~~IVIGtRSAvF------aP~~nLgLIIVDEEhd~SYKq~~~Pry~ARdvA~~Ra~~ 316 (699)
T PRK05580 243 AVLHSGLSDGERYRAWLAALRGEARVVIGTRSALF------APFKNLGLIIVDEEHDDSYKQQDGPRYHARDVAVLRAKQ 316 (699)
T ss_pred EEECCCCCHHHHHHHHHHHHCCCCEEEEECCCEEE------CCCCCCCEEEEECCCCHHHCCCCCCCCCHHHHHHHHHHH
T ss_conf 99648898579999999997699719997360110------657898489997365454446668761199999999998
Q ss_pred CCCCEEEEECCCCCCCCH
Q ss_conf 379879983165324888
Q gi|254780129|r 152 SKVKRFIELTGTPSPNGL 169 (220)
Q Consensus 152 ~~~~~~l~LTgTPi~n~~ 169 (220)
T Consensus 317 ~~~~-liLgSaTPSlEs~ 333 (699)
T PRK05580 317 EGCP-VVLGSATPSLESL 333 (699)
T ss_pred HCCC-EEECCCCCCHHHH
T ss_conf 4998-8961689999999