HHsearch alignment for GI: 254780129 and conserved domain: PRK06647
>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.60 E-value=0.00068 Score=41.50 Aligned_cols=129 Identities=13% Similarity=0.149 Sum_probs=58.2
Q ss_pred CCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 98199968-99988999999999997408994899723310137889999851553460699861121011223456766
Q gi|254780129|r 20 DRCALWAS-MGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAH 98 (220)
Q Consensus 20 ~~~~l~~~-~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (220)
T Consensus 38 ~HAyLFsGprG~GKTt~ArilAk~LnC~~-~~~~--~PCg~C~s-C-~~i~---~g~~~DviEidaasn~---------- 99 (560)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTI--MPCGECFS-C-KSID---NDSSLDVIEIDGASNT---------- 99 (560)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCC--CCCCCCHH-H-HHHH---CCCCCCEEEECCCCCC----------
T ss_conf 74366328998789999999999965999-9998--88878878-8-8874---5999875764364548----------
Q ss_pred EEEECHHHHHCCCC---CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHH
Q ss_conf 27865667310000---00002472000025122013654332036999999985137987998316532488-899999
Q gi|254780129|r 99 LYIINFENIPWLVK---MKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNG-LIDLWG 174 (220)
Q Consensus 99 ~~i~~~~~l~~~~~---~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~-~~el~~ 174 (220)
T Consensus 100 ----~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt-------~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~S 168 (560)
T PRK06647 100 ----SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------NSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS 168 (560)
T ss_pred ----CHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-------HHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHH
T ss_conf ----889999999986328766870699964656559-------999999999863488755999977994768489996
Q ss_pred HHH
Q ss_conf 999
Q gi|254780129|r 175 QIW 177 (220)
Q Consensus 175 ll~ 177 (220)
T Consensus 169 RCQ 171 (560)
T PRK06647 169 RCQ 171 (560)
T ss_pred HHE
T ss_conf 510