HHsearch alignment for GI: 254780129 and conserved domain: PRK06647

>PRK06647 DNA polymerase III subunits gamma and tau; Validated.
Probab=97.60  E-value=0.00068  Score=41.50  Aligned_cols=129  Identities=13%  Similarity=0.149  Sum_probs=58.2

Q ss_pred             CCCEEEEC-CCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf             98199968-99988999999999997408994899723310137889999851553460699861121011223456766
Q gi|254780129|r   20 DRCALWAS-MGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAH   98 (220)
Q Consensus        20 ~~~~l~~~-~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (220)
T Consensus        38 ~HAyLFsGprG~GKTt~ArilAk~LnC~~-~~~~--~PCg~C~s-C-~~i~---~g~~~DviEidaasn~----------   99 (560)
T PRK06647         38 ANAYIFSGPRGVGKTSSARAFARCLNCVN-GPTI--MPCGECFS-C-KSID---NDSSLDVIEIDGASNT----------   99 (560)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHCCCC-CCCC--CCCCCCHH-H-HHHH---CCCCCCEEEECCCCCC----------
T ss_conf             74366328998789999999999965999-9998--88878878-8-8874---5999875764364548----------


Q ss_pred             EEEECHHHHHCCCC---CCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHHHH
Q ss_conf             27865667310000---00002472000025122013654332036999999985137987998316532488-899999
Q gi|254780129|r   99 LYIINFENIPWLVK---MKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNG-LIDLWG  174 (220)
Q Consensus        99 ~~i~~~~~l~~~~~---~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~-~~el~~  174 (220)
T Consensus       100 ----~VddIR~l~e~v~~~P~~~~yKV~IIDEahmLt-------~~A~NALLKtLEEPP~~~~FILaTte~~KI~~TI~S  168 (560)
T PRK06647        100 ----SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS-------NSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS  168 (560)
T ss_pred             ----CHHHHHHHHHHHCCCCCCCCEEEEEECCHHHCC-------HHHHHHHHHHHHCCCCCEEEEEECCCHHHCHHHHHH
T ss_conf             ----889999999986328766870699964656559-------999999999863488755999977994768489996


Q ss_pred             HHH
Q ss_conf             999
Q gi|254780129|r  175 QIW  177 (220)
Q Consensus       175 ll~  177 (220)
T Consensus       169 RCQ  171 (560)
T PRK06647        169 RCQ  171 (560)
T ss_pred             HHE
T ss_conf             510