HHsearch alignment for GI: 254780129 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.56 E-value=1.6e-13 Score=96.79 Aligned_cols=165 Identities=17% Similarity=0.197 Sum_probs=108.8
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCC-------CCEEEEECCCCCHHHHHHHHHHHCCCC
Q ss_conf 134899999999996798199968999889999-999999974089-------948997233101378899998515534
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIKILDP-------RPVLIIAPLRVAQYVWKDEVERWSAFS 75 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~~-------~~~LIi~P~s~~~~~W~~e~~~~~~~~ 75 (220)
T Consensus 23 ~PTpIQ~~aIP~iL~GrDvl~~A~TGSGKTlAflLPil~~l~~~~~~~~~~~~~~aLIL~PTRELA~Qi~~~~~~l~~~~ 102 (457)
T PRK10590 23 EPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL 102 (457)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999997799889988981189999999999998636765445688249997687999999999999742558
Q ss_pred CCEEEEEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 606998611210--11223456766278656673100000-000247200002512201365433203699999998513
Q gi|254780129|r 76 DMTVSSLIGSER--QRIKALNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFS 152 (220)
Q Consensus 76 ~~~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~ 152 (220)
T Consensus 103 ~~~~~~~~Gg~~~~~q~~~l~~~~dIlVaTPGRLldl~~~~~~~l~~v~~lVlDEAD~mLd~gF~~--di~~Il~~l--p 178 (457)
T PRK10590 103 NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIH--DIRRVLAKL--P 178 (457)
T ss_pred CCEEEEEECCCCHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCCCCCCEEEEEECCHHHHCCCCHH--HHHHHHHHC--C
T ss_conf 945999979977759999861899989989288898886267765752399983705651566536--689998638--7
Q ss_pred CCCEEEEECCCCCCCCHHHHH
Q ss_conf 798799831653248889999
Q gi|254780129|r 153 KVKRFIELTGTPSPNGLIDLW 173 (220)
Q Consensus 153 ~~~~~l~LTgTPi~n~~~el~ 173 (220)
T Consensus 179 ~~rQ~llfSAT-~~~~v~~l~ 198 (457)
T PRK10590 179 AKRQNLLFSAT-FSDDIKALA 198 (457)
T ss_pred CCCEEEEEECC-CCHHHHHHH
T ss_conf 65268999504-888999999