HHsearch alignment for GI: 254780129 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.48 E-value=1.6e-12 Score=91.12 Aligned_cols=164 Identities=19% Similarity=0.252 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHC-CCCCEEEEECCCCCHHHHHHHHHHHCC-CCCCEEE
Q ss_conf 134899999999996798199968999889999-9999999740-899489972331013788999985155-3460699
Q gi|254780129|r 4 VLKPHQIVMVNWLLSHDRCALWASMGSGKTVSV-LFALSTIKIL-DPRPVLIIAPLRVAQYVWKDEVERWSA-FSDMTVS 80 (220)
Q Consensus 4 ~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~-~~~~~LIi~P~s~~~~~W~~e~~~~~~-~~~~~~~ 80 (220)
T Consensus 28 ~PTpIQ~~aIP~iL~GkDvi~~AqTGSGKTlAFlLPiL~~l~~~~~~pqaLIL~PTRELA~QV~~~~~~l~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCCCCEEE
T ss_conf 99999999999996799889978884789999999999986623689868997899899999999999997217997799
Q ss_pred EEECCCC--CCCCCCCCCCCEEEECHHHHHCCCCC-CCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEE
Q ss_conf 8611210--11223456766278656673100000-00024720000251220136543320369999999851379879
Q gi|254780129|r 81 SLIGSER--QRIKALNTPAHLYIINFENIPWLVKM-KLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRF 157 (220)
Q Consensus 81 ~~~~~~~--~~~~~~~~~~~~~i~~~~~l~~~~~~-~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~ 157 (220)
T Consensus 108 ~l~GG~~~~~q~~~L~~g~~IVVgTPGRL~d~l~~~~l~L~~l~~lVLDEAD~mL~~gF~~--di~~Il~~l--p~~~Qt 183 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIE--DVETIMAQI--PEGHQT 183 (629)
T ss_pred EEECCCCHHHHHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCCEEEEECHHHHCCCCCHH--HHHHHHHHC--CCCCEE
T ss_conf 9989977899999862799999969899999997296412007678986715533636599--999999867--403144
Q ss_pred EEECCCCCCCCHHHH
Q ss_conf 983165324888999
Q gi|254780129|r 158 IELTGTPSPNGLIDL 172 (220)
Q Consensus 158 l~LTgTPi~n~~~el 172 (220)
T Consensus 184 ~LfSATm-p~~i~~l 197 (629)
T PRK11634 184 ALFSATM-PEAIRRI 197 (629)
T ss_pred EEEECCC-CHHHHHH
T ss_conf 6663146-5999999