HHsearch alignment for GI: 254780129 and conserved domain: PRK12724
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.38 E-value=0.067 Score=30.05 Aligned_cols=130 Identities=15% Similarity=0.117 Sum_probs=67.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEE-ECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEE
Q ss_conf 99968999889999999999974089948997-23310137889999851553460699861121011223456766278
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIKILDPRPVLII-APLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYI 101 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi-~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 101 (220)
T Consensus 227 ~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DT--YRIgAvEQLktYa~Il~iPv-------------------~vv 285 (432)
T PRK12724 227 FFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPF-------------------YPV 285 (432)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCC--CCHHHHHHHHHHHHHHCCCE-------------------EEE
T ss_conf 998999988899999999999997499279995266--53779999999999859945-------------------995
Q ss_pred ECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH-----CCCCEEEEECCCCCCCCHHHHHHHH
Q ss_conf 65667310000000024720000251220136543320369999999851-----3798799831653248889999999
Q gi|254780129|r 102 INFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF-----SKVKRFIELTGTPSPNGLIDLWGQI 176 (220)
Q Consensus 102 ~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~-----~~~~~~l~LTgTPi~n~~~el~~ll 176 (220)
T Consensus 286 ~~~~el~~al~----~~~~DlILIDTAGr--S~r---d~~~~~eL~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f 356 (432)
T PRK12724 286 KDIKKFKETLA----RDGSELILIDTAGY--SHR---NLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAY 356 (432)
T ss_pred ECHHHHHHHHH----HCCCCEEEEECCCC--CCC---CHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHH
T ss_conf 18999999998----56999999929998--978---9999999999998636678851799997889989999999984
Q ss_pred HHHCCC
Q ss_conf 982888
Q gi|254780129|r 177 WFLDKG 182 (220)
Q Consensus 177 ~~l~p~ 182 (220)
T Consensus 357 ~~l~~~ 362 (432)
T PRK12724 357 ESLNYR 362 (432)
T ss_pred CCCCCC
T ss_conf 269998