HHsearch alignment for GI: 254780129 and conserved domain: PRK13826

>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.59  E-value=0.031  Score=31.96  Aligned_cols=139  Identities=15%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             CCCCHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf             713489999999999679819-9968999889999999999974089948997233101378899998515534606998
Q gi|254780129|r    3 LVLKPHQIVMVNWLLSHDRCA-LWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS   81 (220)
Q Consensus         3 ~~Lrp~Q~~a~~~~~~~~~~~-l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~   81 (220)
T Consensus       380 ~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKSt-mL~aAReawEa~GyrV~GaALsGkAA----egLe~~s---GI~Sr-  450 (1102)
T PRK13826        380 ARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTT-MMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEA---GIASR-  450 (1102)
T ss_pred             CCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEECCCHHHH----HHHHHCC---CCCCH-
T ss_conf             138999999999853788668998428887889-99999999997797798015007899----9775346---95303-


Q ss_pred             EECCCCCCCCCCCCCCCEEEECHHHHHC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf             6112101122345676627865667310-000000024720000251220136543320369999999851379879983
Q gi|254780129|r   82 LIGSERQRIKALNTPAHLYIINFENIPW-LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL  160 (220)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L  160 (220)
T Consensus       451 ---------------------TlAs~e~~w~~gr~~L~~~dVlVIDEAGMVg------srqmarvl~~ae~aGA--KvVL  501 (1102)
T PRK13826        451 ---------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVS------SRQMALFVEAVTRAGA--KLVL  501 (1102)
T ss_pred             ---------------------HHHHHHHHHCCCCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHHCCC--EEEE
T ss_conf             ---------------------3899998743586556787389984555655------7999999999997599--8999


Q ss_pred             CCCCCCCCHHHHHHHHHHH
Q ss_conf             1653248889999999982
Q gi|254780129|r  161 TGTPSPNGLIDLWGQIWFL  179 (220)
Q Consensus       161 TgTPi~n~~~el~~ll~~l  179 (220)
T Consensus       502 VGD~~QLQpIeAGaaFrai  520 (1102)
T PRK13826        502 VGDPEQLQPIEAGAAFRAI  520 (1102)
T ss_pred             ECCHHHHCCCCCCHHHHHH
T ss_conf             6887882761046889999