HHsearch alignment for GI: 254780129 and conserved domain: PRK13826
>PRK13826 Dtr system oriT relaxase; Provisional.
Probab=96.59 E-value=0.031 Score=31.96 Aligned_cols=139 Identities=15% Similarity=0.091 Sum_probs=77.8
Q ss_pred CCCCHHHHHHHHHHHHCCCCE-EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 713489999999999679819-9968999889999999999974089948997233101378899998515534606998
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCA-LWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~-l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 380 ~~Ls~EQ~~Av~hiT~~~~Ia~VvG~AGaGKSt-mL~aAReawEa~GyrV~GaALsGkAA----egLe~~s---GI~Sr- 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGAERIAAVIGRAGAGKTT-MMKAAREAWEAAGYRVVGGALAGKAA----EGLEKEA---GIASR- 450 (1102)
T ss_pred CCCCHHHHHHHHHHCCCCCEEEEEECCCCCHHH-HHHHHHHHHHHCCCEEEEECCCHHHH----HHHHHCC---CCCCH-
T ss_conf 138999999999853788668998428887889-99999999997797798015007899----9775346---95303-
Q ss_pred EECCCCCCCCCCCCCCCEEEECHHHHHC-CCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6112101122345676627865667310-000000024720000251220136543320369999999851379879983
Q gi|254780129|r 82 LIGSERQRIKALNTPAHLYIINFENIPW-LVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIEL 160 (220)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~i~~~~~l~~-~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~L 160 (220)
T Consensus 451 ---------------------TlAs~e~~w~~gr~~L~~~dVlVIDEAGMVg------srqmarvl~~ae~aGA--KvVL 501 (1102)
T PRK13826 451 ---------------------TLSSWELRWNQGRDQLDNKTVFVLDEAGMVS------SRQMALFVEAVTRAGA--KLVL 501 (1102)
T ss_pred ---------------------HHHHHHHHHCCCCCCCCCCCEEEEECCCCCC------HHHHHHHHHHHHHCCC--EEEE
T ss_conf ---------------------3899998743586556787389984555655------7999999999997599--8999
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 1653248889999999982
Q gi|254780129|r 161 TGTPSPNGLIDLWGQIWFL 179 (220)
Q Consensus 161 TgTPi~n~~~el~~ll~~l 179 (220)
T Consensus 502 VGD~~QLQpIeAGaaFrai 520 (1102)
T PRK13826 502 VGDPEQLQPIEAGAAFRAI 520 (1102)
T ss_pred ECCHHHHCCCCCCHHHHHH
T ss_conf 6887882761046889999