HHsearch alignment for GI: 254780129 and conserved domain: TIGR00595
>TIGR00595 priA primosomal protein N'; InterPro: IPR005259 All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.; GO: 0003677 DNA binding, 0006260 DNA replication.
Probab=98.12 E-value=1.8e-05 Score=50.56 Aligned_cols=141 Identities=17% Similarity=0.095 Sum_probs=84.3
Q ss_pred EEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEE-ECCC-CC--CCCCCCCCCCE
Q ss_conf 99689998899999999999740899489972331013788999985155346069986-1121-01--12234567662
Q gi|254780129|r 24 LWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSL-IGSE-RQ--RIKALNTPAHL 99 (220)
Q Consensus 24 l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~-~~~~-~~--~~~~~~~~~~~ 99 (220)
T Consensus 2 l~G~tGsGkte~y~~~~~~~l~-~g~~~~~l~Pei~l~~q~~~~~~~~fg~~~~~~h~~~l~~~~~~~~w~~~~~g~~~~ 80 (524)
T TIGR00595 2 LFGVTGSGKTEVYLQAIEKVLA-LGKSALVLVPEIALTPQTLQRFKGRFGSQVAVLHSGKLSDSEKLDAWRKVKLGEALV 80 (524)
T ss_pred CCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHHHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHCCCCEE
T ss_conf 5456788616888999999973-377178970421101678999999718720101001367345688999985186005
Q ss_pred EEECHHHHHCCCCCCCCCCCCCCCCCCHHHC--CCCCCC-CCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHH
Q ss_conf 7865667310000000024720000251220--136543-320369999999851379879983165324888999
Q gi|254780129|r 100 YIINFENIPWLVKMKLDHWDFATIVVDESTK--LKSFRT-HQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDL 172 (220)
Q Consensus 100 ~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~--~kn~~~-~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el 172 (220)
T Consensus 81 v~G~rsa~f------~P~~~lglii~deehd~~yk~~~~~p~y~ar~~~~~~~~~~~~p-~~lgsatP~le~~~~~ 149 (524)
T TIGR00595 81 VIGTRSALF------LPLKNLGLIIVDEEHDSSYKQEELPPRYHARDVAVYRAKLFNCP-VVLGSATPSLESYHNA 149 (524)
T ss_pred EECCCHHHH------CCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC-EEECCCCCCHHHHHHH
T ss_conf 640303432------46211454787346452100136885520678898876404885-7880567227899998