HHsearch alignment for GI: 254780129 and conserved domain: TIGR01074
>TIGR01074 rep ATP-dependent DNA helicase Rep; InterPro: IPR005752 RepA hexameric DNA helicase contain ATP-binding domains similar to those seen in monomeric helicases but which are arranged in a ring. There is compelling evidence to suggest that a single ssDNA molecule passes through the centre of the hexameric ring. Activity of the enzyme is based upon two separate but coupled activities, ssDNA translocation and duplex destabilisation, and is driven by energy derived from the continuous ATP-binding and hydrolysis events that take place in the active-site cleft. The resulting conformational changes that accompany these events underpin the coupling process and allow the helicase to translocate along the DNA, destabilizing the duplex and separating the two strands in an active process ; GO: 0004003 ATP-dependent DNA helicase activity, 0006268 DNA unwinding during replication, 0005737 cytoplasm.
Probab=95.50 E-value=0.033 Score=31.85 Aligned_cols=78 Identities=21% Similarity=0.155 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-HHCCCCCEEEEECCCCCHHHHHHHHHH----HCC---C
Q ss_conf 71348999999999967981999689998899999999999-740899489972331013788999985----155---3
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTI-KILDPRPVLIIAPLRVAQYVWKDEVER----WSA---F 74 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~-~~~~~~~~LIi~P~s~~~~~W~~e~~~----~~~---~ 74 (220)
T Consensus 2 ~~LNp~Q~~AV~Y-~~GPlLVL-AGAGSGKT~VI~~KIayLi~~cgY~a~~IaAvT--FTNKAA~EMkERVA~~L~~~~~ 77 (677)
T TIGR01074 2 SKLNPQQQEAVEY-VGGPLLVL-AGAGSGKTRVITNKIAYLIQNCGYKAKNIAAVT--FTNKAAREMKERVAKTLGKGQA 77 (677)
T ss_pred CCCCHHHHHHHHH-HCCCCEEE-CCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEE--CCHHHHHHHHHHHHHHCCCCCC
T ss_conf 8887437999986-15871465-177778635788899998751587876168973--5237779999999852265455
Q ss_pred CCCEEEEEEC
Q ss_conf 4606998611
Q gi|254780129|r 75 SDMTVSSLIG 84 (220)
Q Consensus 75 ~~~~~~~~~~ 84 (220)
T Consensus 78 ~GL~isTFH~ 87 (677)
T TIGR01074 78 KGLTISTFHT 87 (677)
T ss_pred CCCEEECCHH
T ss_conf 8544752057