HHsearch alignment for GI: 254780129 and conserved domain: TIGR01447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit; InterPro: IPR006344 This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. C-terminal part of the protein matches a domain found in viral RNA helicase, superfamily 1, IPR000606 from INTERPRO. ; GO: 0008854 exodeoxyribonuclease V activity, 0009338 exodeoxyribonuclease V complex.
Probab=98.25 E-value=2.4e-06 Score=55.62 Aligned_cols=163 Identities=16% Similarity=0.127 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH----HHH-CCC-CCEEEEECCCCCHHHHHHHHHHHCCCCCCEE
Q ss_conf 4899999999996798199968999889999999999----974-089-9489972331013788999985155346069
Q gi|254780129|r 6 KPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALST----IKI-LDP-RPVLIIAPLRVAQYVWKDEVERWSAFSDMTV 79 (220)
Q Consensus 6 rp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~----~~~-~~~-~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 229 ~D~Q~~a~~~aL~~~f~li~GGPGTGKTTTv~~LL~al~~~~~~~G~~~~~I~l~APTGKAa~RL~esl~~~~~--~L~~ 306 (753)
T TIGR01447 229 TDWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALIKQSPKQGKPRLRIALAAPTGKAAARLAESLRKAVK--KLAA 306 (753)
T ss_pred HHHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHH--HHHH
T ss_conf 37999999998608768998798897789999999999998986499740478866844799999999998863--2234
Q ss_pred EEEECCCCCCCCCCCCCCCEEEECHHHHH--------CCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98611210112234567662786566731--------0000000024720000251220136543320369999999851
Q gi|254780129|r 80 SSLIGSERQRIKALNTPAHLYIINFENIP--------WLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAF 151 (220)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~i~~~~~l~--------~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~ 151 (220)
T Consensus 307 ~~~ai-d~~~~----~~~~~~~~TiHrLLG~~~I~~~~fr~h~~N~L~~DVLvvDEaSMVdl---~lm~kL~~A~~~--- 375 (753)
T TIGR01447 307 ENMAI-DEDLI----AALPSEATTIHRLLGIKPIDTKRFRHHERNPLPLDVLVVDEASMVDL---PLMAKLLKALPP--- 375 (753)
T ss_pred HCCCC-CHHHH----CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCHHCCH---HHHHHHHHHCCC---
T ss_conf 23665-87985----48720456888861661478767767777889855278706002267---999999972263---
Q ss_pred CCCC------EEEEECCCCCCCCHHHH----HHHHHHHCCC
Q ss_conf 3798------79983165324888999----9999982888
Q gi|254780129|r 152 SKVK------RFIELTGTPSPNGLIDL----WGQIWFLDKG 182 (220)
Q Consensus 152 ~~~~------~~l~LTgTPi~n~~~el----~~ll~~l~p~ 182 (220)
T Consensus 376 -~~k~~KLy~~~LIllGD~nQL~sveaG~Vl~~l~~~~~~g 415 (753)
T TIGR01447 376 -NTKDKKLYADRLILLGDKNQLPSVEAGAVLGDLCELANEG 415 (753)
T ss_pred -CCCCCCHHHCCCCEECCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf -0013201010200122678888754355579999997537