HHsearch alignment for GI: 254780129 and conserved domain: TIGR01970
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB; InterPro: IPR010225 This entry represents HrpB, one of two related predicted DEAH-box ATP-dependent helicases of unknown function found in many proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti, designated HelO, has been studied but is not essential for growth and mutants have no obvious phenotype . HrpB is typically about 800 residues in length, while its paralog HrpA (IPR010222 from INTERPRO), also uncharacterised, is about 1300 amino acids long. Related characterised eukaryotic proteins are RNA helicases associated with pre-mRNA processing ..
Probab=98.02 E-value=1.3e-05 Score=51.40 Aligned_cols=159 Identities=14% Similarity=0.149 Sum_probs=87.8
Q ss_pred HHHHCCCCEEEECCCCCHHHHH-HHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHC-CCCCCEEEEEECCCCCCCCC
Q ss_conf 9996798199968999889999-999999974089948997233101378899998515-53460699861121011223
Q gi|254780129|r 15 WLLSHDRCALWASMGSGKTVSV-LFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWS-AFSDMTVSSLIGSERQRIKA 92 (220)
Q Consensus 15 ~~~~~~~~~l~~~~G~GKT~~a-i~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~-~~~~~~~~~~~~~~~~~~~~ 92 (220)
T Consensus 13 al~~~~~vvL~APpGAGKsT~~PLaLL~~pW-~~~~kIimLEPRRlAA----R~~A~rlA~~LgE~VG~tVGyRvR~enk 87 (858)
T TIGR01970 13 ALAAHPQVVLEAPPGAGKSTAVPLALLDAPW-LIGGKIIMLEPRRLAA----RSAAQRLASQLGEEVGDTVGYRVRLENK 87 (858)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHH-HCCCEEEEECCHHHHH----HHHHHHHHHHHCCCCCCCCCEEEECCCC
T ss_conf 8611765064167224711058899766264-3488078747447899----9999999997088988620405771132
Q ss_pred CCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHH-HHHCCCCEEEEECCCCCCCCHHH
Q ss_conf 45676627865667310000000024720000251220136543320369999999-85137987998316532488899
Q gi|254780129|r 93 LNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGK-VAFSKVKRFIELTGTPSPNGLID 171 (220)
Q Consensus 93 ~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~-~~~~~~~~~l~LTgTPi~n~~~e 171 (220)
T Consensus 88 Vs~~TRlEvVTEGiLTRMlQ~DP~L~GVg~liFDEFHE-RsL~aDLaLALaLdVQs~LRdDPPLkil~MSATLdg~rLs~ 166 (858)
T TIGR01970 88 VSARTRLEVVTEGILTRMLQDDPELEGVGLLIFDEFHE-RSLDADLALALALDVQSALRDDPPLKILIMSATLDGERLSS 166 (858)
T ss_pred CCCCCCEEEEECCHHHHHCCCCCCCCCCCEEEECHHHH-HHHHHHHHHHHHHHHHHHHCCCCCCEEHHCCCCCHHHHHHH
T ss_conf 58775457872326877401688845352323110224-34678899999885334310686400000002632799997
Q ss_pred HHHHHHHH
Q ss_conf 99999982
Q gi|254780129|r 172 LWGQIWFL 179 (220)
Q Consensus 172 l~~ll~~l 179 (220)
T Consensus 167 LL~~Ap~v 174 (858)
T TIGR01970 167 LLPDAPVV 174 (858)
T ss_pred HCCCCCEE
T ss_conf 43302642