HHsearch alignment for GI: 254780129 and conserved domain: TIGR03117

>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.27  E-value=5.9e-06  Score=53.36  Aligned_cols=50  Identities=26%  Similarity=0.257  Sum_probs=31.0

Q ss_pred             HHHCCCCEE-EECCCCCHHHHHH-HHHHHHHHCCCCCEEEEECCCCCHHHHH
Q ss_conf             996798199-9689998899999-9999997408994899723310137889
Q gi|254780129|r   16 LLSHDRCAL-WASMGSGKTVSVL-FALSTIKILDPRPVLIIAPLRVAQYVWK   65 (220)
Q Consensus        16 ~~~~~~~~l-~~~~G~GKT~~ai-~~~~~~~~~~~~~~LIi~P~s~~~~~W~   65 (220)
T Consensus        12 a~~~~~v~lVEAGTGTGKSLAYLvPAl~~a~~~~g~rVVISTaT~aLQeQL~   63 (636)
T TIGR03117        12 SLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLW   63 (636)
T ss_pred             HHHCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHH
T ss_conf             8603848999899971088999999999998579998899798799999997