HHsearch alignment for GI: 254780129 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.55 E-value=0.32 Score=26.17 Aligned_cols=141 Identities=17% Similarity=0.141 Sum_probs=63.9
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHH-HHHCCCCCCEEEE--EECCCCCCCC---CCCC
Q ss_conf 19996899988999999999997408994899723310137889999-8515534606998--6112101122---3456
Q gi|254780129|r 22 CALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEV-ERWSAFSDMTVSS--LIGSERQRIK---ALNT 95 (220)
Q Consensus 22 ~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~-~~~~~~~~~~~~~--~~~~~~~~~~---~~~~ 95 (220)
T Consensus 197 iIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSL-EMs~eql~~R~la~~s~i~~~~i~~g~l~~~~~~~~~~a~~~l~ 275 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVALREGKPVLFFSL-EMSAEQLGERLLASKSGINTGNIRTGRFNDSDFNRLLNAVDRLS 275 (421)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEEC-CCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 99985467874599999999999866983899925-79999999999998548977666528999899999999999861
Q ss_pred CCCEEEE-----CHHHHHCCCCCC-CCCCCCCCCCCCHHHCCCCCCCC----CHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 7662786-----566731000000-00247200002512201365433----20369999999851379879983165
Q gi|254780129|r 96 PAHLYII-----NFENIPWLVKMK-LDHWDFATIVVDESTKLKSFRTH----QGTKQTRALGKVAFSKVKRFIELTGT 163 (220)
Q Consensus 96 ~~~~~i~-----~~~~l~~~~~~~-~~~~~~~~iIiDEaH~~kn~~~~----~~~k~~k~l~~~~~~~~~~~l~LTgT 163 (220)
T Consensus 276 ~~~l~i~d~~~~ti~~ir~~~r~~~~~~~~l~livIDYLqLi~~~~~~~r~~ei~~Isr~LK~lAkel~ipVi~lsQL 353 (421)
T TIGR03600 276 EKDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMAPTRGRDRNEELGGISRGLKALAKELDVPVVLLAQL 353 (421)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEECHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCC
T ss_conf 687899669988767899999999986289869997578653788888889999999999999999979978997057