HHsearch alignment for GI: 254780129 and conserved domain: cd00984
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.55 E-value=0.044 Score=31.08 Aligned_cols=138 Identities=18% Similarity=0.125 Sum_probs=64.5
Q ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHH----CCCCCCEEEEEE--CCCCCCC-CC--
Q ss_conf 19996899988999999999997408994899723310137889999851----553460699861--1210112-23--
Q gi|254780129|r 22 CALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERW----SAFSDMTVSSLI--GSERQRI-KA-- 92 (220)
Q Consensus 22 ~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~----~~~~~~~~~~~~--~~~~~~~-~~-- 92 (220)
T Consensus 16 ~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~----~~~~~~R~~s~~~~i~~~~i~~~~~~~~~~~~~~~~~~ 91 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMS----KEQLLQRLLASESGISLSKLRTGSLSDEDWERLAEAIG 91 (242)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC----HHHHHHHHHHHHHCCCHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 99996899999999999999999977995999933353----88999999999829774553026522799999999999
Q ss_pred CCCCCCEEEE-----CHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCC-----HHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 4567662786-----566731000000002472000025122013654332-----036999999985137987998316
Q gi|254780129|r 93 LNTPAHLYII-----NFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQ-----GTKQTRALGKVAFSKVKRFIELTG 162 (220)
Q Consensus 93 ~~~~~~~~i~-----~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~-----~~k~~k~l~~~~~~~~~~~l~LTg 162 (220)
T Consensus 92 ~~~~~~l~i~d~~~~t~~~i~~~ir~~~~~~~~~~vvvDylql~~~~~~~~~~~~~i~~i~~~Lk~lA~e~~v~Vi~~sQ 171 (242)
T cd00984 92 ELKELPIYIDDSSSLTVSDIRSRARRLKKEHGLGLIVIDYLQLMSGSKKKGNRQQEVAEISRSLKLLAKELNVPVIALSQ 171 (242)
T ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEC
T ss_conf 86169889966999999999999999988369989998269854677766579999999999999999997993999846
Q ss_pred C
Q ss_conf 5
Q gi|254780129|r 163 T 163 (220)
Q Consensus 163 T 163 (220)
T Consensus 172 l 172 (242)
T cd00984 172 L 172 (242)
T ss_pred C
T ss_conf 7