HHsearch alignment for GI: 254780129 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=91.90  E-value=0.86  Score=23.68  Aligned_cols=33  Identities=27%  Similarity=0.198  Sum_probs=23.1

Q ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             1999689998899999999999740899489972
Q gi|254780129|r   22 CALWASMGSGKTVSVLFALSTIKILDPRPVLIIA   55 (220)
Q Consensus        22 ~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~   55 (220)
T Consensus         2 tLi~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis   34 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVT   34 (187)
T ss_pred             EEEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEE
T ss_conf             158768999999999999999987-699789999