HHsearch alignment for GI: 254780129 and conserved domain: pfam00176
>pfam00176 SNF2_N SNF2 family N-terminal domain. This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1).
Probab=100.00 E-value=4.6e-44 Score=272.21 Aligned_cols=186 Identities=29% Similarity=0.430 Sum_probs=146.0
Q ss_pred HHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEE
Q ss_conf 99999999996----79819996899988999999999997408--9948997233101378899998515534606998
Q gi|254780129|r 8 HQIVMVNWLLS----HDRCALWASMGSGKTVSVLFALSTIKILD--PRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSS 81 (220)
Q Consensus 8 ~Q~~a~~~~~~----~~~~~l~~~~G~GKT~~ai~~~~~~~~~~--~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~ 81 (220)
T Consensus 1 yQ~~gv~wl~~~~~~~~ggiLaDeMGLGKTiq~ia~l~~~~~~~~~~~~~LIV~P~sl~~~-W~~Ei~~~~~~~~~~~~~ 79 (295)
T pfam00176 1 YQLEGVNWLISLYNNGLGGILADEMGLGKTLQTISLLAYLKELKPLAGPHLVVCPLSTLDN-WLNEFEKWAPDLNIVVYY 79 (295)
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHHH-HHHHHHHHCCCCCEEEEE
T ss_conf 9788999999987279998972278757999999999999983889998899975788876-788999867997079998
Q ss_pred EECCCCCCC-C--CCCCCCCEEEECHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf 611210112-2--3456766278656673100000000247200002512201365433203699999998513798799
Q gi|254780129|r 82 LIGSERQRI-K--ALNTPAHLYIINFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFI 158 (220)
Q Consensus 82 ~~~~~~~~~-~--~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l 158 (220)
T Consensus 80 ~~~~~r~~~~~~~~~~~~~~ivitsY~~~~~~~-~~l~~~~w~~vI~DEaH~iKN~----~s~~~~a~~~l---~~~~r~ 151 (295)
T pfam00176 80 GDGDSRSELLRNVLRTGKFDVLITSYEYIRRDK-DELHKANWRYVILDEGHRIKNA----KSKLSLALKSL---KTNNRL 151 (295)
T ss_pred ECHHHHHHHHHHHHHCCCCCEEEECHHHHHHHH-HHHHCCCCCEEEEECCCCCCCH----HHHHHHHHHHC---CCCCEE
T ss_conf 470768999886774168859993099999759-9984087658998762012587----88999999952---358189
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCHHHCCC
Q ss_conf 8316532488899999999828885346999999996166242046
Q gi|254780129|r 159 ELTGTPSPNGLIDLWGQIWFLDKGKRLGLSFKSFVERWFHTQQVGS 204 (220)
Q Consensus 159 ~LTgTPi~n~~~el~~ll~~l~p~~~~~~~~~~F~~~y~~~~~~~~ 204 (220)
T Consensus 152 ~LTGTPiqN~l~el~~ll~fl~p~~--~~~~~~f~~~~~~~~~~~~ 195 (295)
T pfam00176 152 LLTGTPIQNNLAELWSLLNFLRPGI--FGSFKEFDKWFVNPILNGG 195 (295)
T ss_pred EEECCCCCCCHHHHHHHHHHHCCCC--CCCHHHHHHHHCCHHHCCC
T ss_conf 9868745588899999999958765--6999999999723554277