HHsearch alignment for GI: 254780129 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=94.70 E-value=0.29 Score=26.39 Aligned_cols=137 Identities=14% Similarity=0.068 Sum_probs=62.3
Q ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCEEEE
Q ss_conf 99968999889999999999974089948997233101378899998515534606998611210112234567662786
Q gi|254780129|r 23 ALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQYVWKDEVERWSAFSDMTVSSLIGSERQRIKALNTPAHLYII 102 (220)
Q Consensus 23 ~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~~W~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 102 (220)
T Consensus 5 ~lvGptGvGKTTTiaKLAa~~~~~~-~~V~lit~Dt-~R~gA~eQL~~ya~~l~v~~~~~~~~~-----------d~~-- 69 (196)
T pfam00448 5 LLVGLQGSGKTTTIAKLAAYLKKQG-KKVLLVAADT-FRAAAIEQLKQLAERLGVPVFGSGTGS-----------DPA-- 69 (196)
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCC-CEEEEEECCC-CCHHHHHHHHHHHHHCCCEEEECCCCC-----------CHH--
T ss_conf 9989999988999999999999779-9289997587-768899999999986398178148777-----------878--
Q ss_pred CHHHHHCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHC
Q ss_conf 566731000000002472000025122013654332036999999985137987998316532488899999999828
Q gi|254780129|r 103 NFENIPWLVKMKLDHWDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTPSPNGLIDLWGQIWFLD 180 (220)
Q Consensus 103 ~~~~l~~~~~~~~~~~~~~~iIiDEaH~~kn~~~~~~~k~~k~l~~~~~~~~~~~l~LTgTPi~n~~~el~~ll~~l~ 180 (220)
T Consensus 70 --~~~~~~l~~-~~~~~~D~IlIDTaGr--~~~d~~~~~el~~~~~~~-~~~~~~LVl~a~~~~~~~~~~~~f~~~~~ 141 (196)
T pfam00448 70 --AVAFDAVEK-AKAENYDVVLVDTAGR--LQNDKNLMDELKKIKRVI-APDEVLLVLDATTGQNALNQAKAFNEAVG 141 (196)
T ss_pred --HHHHHHHHH-HHHCCCCEEEEECCCC--CCCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf --999999999-8846899999989998--747677899999998522-87302899856778213789998760047