HHsearch alignment for GI: 254780129 and conserved domain: pfam07517
>pfam07517 SecA_DEAD SecA DEAD-like domain. SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP dependent manner. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the pfam00270.
Probab=97.60 E-value=0.0003 Score=43.56 Aligned_cols=123 Identities=16% Similarity=0.206 Sum_probs=65.4
Q ss_pred CCCCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHH---HHHHHHHHHCCCCCCEE
Q ss_conf 713489999999999679819996899988999999999997408994899723310137---88999985155346069
Q gi|254780129|r 3 LVLKPHQIVMVNWLLSHDRCALWASMGSGKTVSVLFALSTIKILDPRPVLIIAPLRVAQY---VWKDEVERWSAFSDMTV 79 (220)
Q Consensus 3 ~~Lrp~Q~~a~~~~~~~~~~~l~~~~G~GKT~~ai~~~~~~~~~~~~~~LIi~P~s~~~~---~W~~e~~~~~~~~~~~~ 79 (220)
T Consensus 74 lg~r~ydvQl~ggi~L~~G~IaEM~TGEGKTL~atl~-a~l~AL~Gk~VhvvTvNdYLA~RDae~m~~vy~~L---GLsv 149 (381)
T pfam07517 74 LGMRHYDVQLIGGLVLHEGKIAEMKTGEGKTLTATLP-AYLNALSGKGVHVVTVNDYLAKRDAEWMGPLYEFL---GLSV 149 (381)
T ss_pred HCCCCCCHHHHHHHHHCCCCEEEEECCCCCHHHHHHH-HHHHHCCCCCCEEEECCHHHHHHHHHHHHHHHHHH---CCEE
T ss_conf 4882452699989997048725887699811999999-99997379974899758888688999979999984---8605
Q ss_pred EEEECC--CCCCCCCCCCCCCEE-EECHHH----HHCCC---CCCCCCCCCCCCCCCHHHCC
Q ss_conf 986112--101122345676627-865667----31000---00000247200002512201
Q gi|254780129|r 80 SSLIGS--ERQRIKALNTPAHLY-IINFEN----IPWLV---KMKLDHWDFATIVVDESTKL 131 (220)
Q Consensus 80 ~~~~~~--~~~~~~~~~~~~~~~-i~~~~~----l~~~~---~~~~~~~~~~~iIiDEaH~~ 131 (220)
T Consensus 150 g~i~~~~~~~err~aY~--~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSi 209 (381)
T pfam07517 150 GVITSDMSPEERREAYN--CDITYGTNSELGFDYLRDNMALSKEDKVQRGLNFAIVDEVDSI 209 (381)
T ss_pred EECCCCCCHHHHHHHHH--CCCEECCHHHHHHHHHHHHHHCCHHHHCCCCCCEEEEECCCHH
T ss_conf 42278898488898751--6605503223214453234415825434577776999745112