RPSBLAST alignment for GI: 254780129 and conserved domain: KOG0387

>gnl|CDD|35608 KOG0387, KOG0387, KOG0387, Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription, Replication, recombination and repair]. Length = 923

 Score = 60.4 bits (146), Expect = 4e-10
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 30/199 (15%)

Query: 5   LKPHQIVMVNWL--LSHDRCA--LWASMGSGKTVSVLFALSTI--KILDPRPVLIIAPLR 58
           L P+Q   V WL  L   R    L   MG GKT+ ++  L+ +       +P LI+ P  
Sbjct: 206 LFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT 265

Query: 59  VAQYVWKDEVERWSAFSDMTV-------------SSLIGSERQRIKALNTPAHLYIINFE 105
           +    W  E + W     + +              S    ++  I+ + T   + I  ++
Sbjct: 266 IIHQ-WMKEFQTWWPPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYD 324

Query: 106 NIPWLVKMKLDH-WDFATIVVDESTKLKSFRTHQGTKQTRALGKVAFSKVKRFIELTGTP 164
                    L   WD+   ++DE  ++++      +K + A  K     V R I L+GTP
Sbjct: 325 GFRIQGDDLLGILWDYV--ILDEGHRIRN----PNSKISLACKK--IRTVHRII-LSGTP 375

Query: 165 SPNGLIDLWGQIWFLDKGK 183
             N L +LW    F+  GK
Sbjct: 376 IQNNLTELWSLFDFVFPGK 394