HHsearch alignment for GI: 254780130 and conserved domain: COG0514
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=98.42 E-value=6.2e-06 Score=52.35 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=81.5
Q ss_pred HCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf 148997110578999999987653----------0477823489999997278986999721443233224320675897
Q gi|254780130|r 65 KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205)
Q Consensus 65 ~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205)
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT-~AFGMGIdKpd-VRfViH 304 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT-NAFGMGIDKPD-VRFVIH 304 (590)
T ss_pred CCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC-CEEEEE
T ss_conf 2468972899933775999999999779725775189889999999999716998689996-46247767888-407998
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH
Q ss_conf 268999888022555576665420265775399999838895
Q gi|254780130|r 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176 (205)
Q Consensus 135 ~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti 176 (205)
T Consensus 305 ~~lP~s~EsYyQE~GR-----AGRDG~~a~ail--l~~~~D~ 339 (590)
T COG0514 305 YDLPGSIESYYQETGR-----AGRDGLPAEAIL--LYSPEDI 339 (590)
T ss_pred ECCCCCHHHHHHHHHH-----CCCCCCCCEEEE--EECCCCH
T ss_conf 0699898999999713-----567877021788--6063007