HHsearch alignment for GI: 254780130 and conserved domain: COG0514

>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair].
Probab=98.42  E-value=6.2e-06  Score=52.35  Aligned_cols=103  Identities=15%  Similarity=0.189  Sum_probs=81.5

Q ss_pred             HCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf             148997110578999999987653----------0477823489999997278986999721443233224320675897
Q gi|254780130|r   65 KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF  134 (205)
Q Consensus        65 ~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~  134 (205)
T Consensus       227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT-~AFGMGIdKpd-VRfViH  304 (590)
T COG0514         227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT-NAFGMGIDKPD-VRFVIH  304 (590)
T ss_pred             CCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC-CEEEEE
T ss_conf             2468972899933775999999999779725775189889999999999716998689996-46247767888-407998


Q ss_pred             ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH
Q ss_conf             268999888022555576665420265775399999838895
Q gi|254780130|r  135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI  176 (205)
Q Consensus       135 ~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti  176 (205)
T Consensus       305 ~~lP~s~EsYyQE~GR-----AGRDG~~a~ail--l~~~~D~  339 (590)
T COG0514         305 YDLPGSIESYYQETGR-----AGRDGLPAEAIL--LYSPEDI  339 (590)
T ss_pred             ECCCCCHHHHHHHHHH-----CCCCCCCCEEEE--EECCCCH
T ss_conf             0699898999999713-----567877021788--6063007