HHsearch alignment for GI: 254780130 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=99.73 E-value=1.9e-16 Score=110.49 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEHHHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHC
Q ss_conf 0572343349999861----4899711057899999998765304-------------------7782348999999727
Q gi|254780130|r 50 EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ-------------------GRTLDKDPCTIQEWNE 106 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~----~~~~kviVf~~f~~~l~~l~~~~~~-------------------~~~~~~r~~~i~~f~~ 106 (205)
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~ 423 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK 423 (542)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 68896189999999999723898559999614758999999998528752068861145455666588899999999865
Q ss_pred CCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 89869997214432332243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 107 ~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
T Consensus 424 Ge~nVLVaT-SVgEEGLDIp~-vDlVifYEpvpSeIR~IQR~GR--------TGR~r~Grv~vLvt~gtrdeayy~~s~r 493 (542)
T COG1111 424 GEYNVLVAT-SVGEEGLDIPE-VDLVIFYEPVPSEIRSIQRKGR--------TGRKRKGRVVVLVTEGTRDEAYYYSSRR 493 (542)
T ss_pred CCCEEEEEC-CCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHCC--------CCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 785189981-23224678876-5679995688578899986074--------4557797499999658627899999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999986
Q gi|254780130|r 187 KSTIQDLLLNALKK 200 (205)
Q Consensus 187 K~~~~~~~l~~~~~ 200 (205)
T Consensus 494 ke~~m~e~i~~~~~ 507 (542)
T COG1111 494 KEQKMIESIRGLSL 507 (542)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999998887