HHsearch alignment for GI: 254780130 and conserved domain: COG1197
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=91.83 E-value=0.91 Score=23.79 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=61.9
Q ss_pred EEEHHHHHHHHHHHH----HHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-ECC
Q ss_conf 110578999999987----65304778--------23489999997278986999721443233224320675897-268
Q gi|254780130|r 71 IIVAYHFNSDLARLQ----KAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-FSL 137 (205)
Q Consensus 71 viVf~~f~~~l~~l~----~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-~~~ 137 (205)
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTI-IEtGIDIPn-ANTiIIe~AD 883 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTI-IETGIDIPN-ANTIIIERAD 883 (1139)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEE-EECCCCCCC-CCEEEEECCC
T ss_conf 99994333129999999998598468888525888899999999997288888988234-304767778-7558896543
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC--CCHHHHHHHHHHHH
Q ss_conf 999888022555576665420265775399999838--89589999999999
Q gi|254780130|r 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--NTIDELVLQRLRTK 187 (205)
Q Consensus 138 ~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~--~tiEe~i~~~l~~K 187 (205)
T Consensus 884 ~fGLsQLyQLRGRV--GRS~------~~AYAYfl~p~~k~lT~~A~kRL~aI 927 (1139)
T COG1197 884 KFGLAQLYQLRGRV--GRSN------KQAYAYFLYPPQKALTEDAEKRLEAI 927 (1139)
T ss_pred CCCHHHHHHHCCCC--CCCC------CEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 34578888751654--7767------62899996267554587899999999