HHsearch alignment for GI: 254780130 and conserved domain: COG1197

>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].
Probab=91.83  E-value=0.91  Score=23.79  Aligned_cols=107  Identities=13%  Similarity=0.214  Sum_probs=61.9

Q ss_pred             EEEHHHHHHHHHHHH----HHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-ECC
Q ss_conf             110578999999987----65304778--------23489999997278986999721443233224320675897-268
Q gi|254780130|r   71 IIVAYHFNSDLARLQ----KAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-FSL  137 (205)
Q Consensus        71 viVf~~f~~~l~~l~----~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-~~~  137 (205)
T Consensus       806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTI-IEtGIDIPn-ANTiIIe~AD  883 (1139)
T COG1197         806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTI-IETGIDIPN-ANTIIIERAD  883 (1139)
T ss_pred             EEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEE-EECCCCCCC-CCEEEEECCC
T ss_conf             99994333129999999998598468888525888899999999997288888988234-304767778-7558896543


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC--CCHHHHHHHHHHHH
Q ss_conf             999888022555576665420265775399999838--89589999999999
Q gi|254780130|r  138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--NTIDELVLQRLRTK  187 (205)
Q Consensus       138 ~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~--~tiEe~i~~~l~~K  187 (205)
T Consensus       884 ~fGLsQLyQLRGRV--GRS~------~~AYAYfl~p~~k~lT~~A~kRL~aI  927 (1139)
T COG1197         884 KFGLAQLYQLRGRV--GRSN------KQAYAYFLYPPQKALTEDAEKRLEAI  927 (1139)
T ss_pred             CCCHHHHHHHCCCC--CCCC------CEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf             34578888751654--7767------62899996267554587899999999