HHsearch alignment for GI: 254780130 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=97.79 E-value=0.0001 Score=45.69 Aligned_cols=126 Identities=20% Similarity=0.353 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHH------CCC--CCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 2343349999861------489--971105789999999876530----------4778234899999972789869997
Q gi|254780130|r 53 DEKIKALEVIIEK------ANA--APIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114 (205)
Q Consensus 53 ~~Kl~~l~~ii~~------~~~--~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~ 114 (205)
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 67778999999999754411376773699942166699999886107866654437986788888999976087555764
Q ss_pred CHHHHHHHHHHHHHCCEEEEECC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC---------CCHHHHH
Q ss_conf 21443233224320675897268-----999888022555576665420265775399999838---------8958999
Q gi|254780130|r 115 HPASCGHGLNLQYGGNILVFFSL-----WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ---------NTIDELV 180 (205)
Q Consensus 115 ~~~a~g~GlnL~~a~~~vI~~~~-----~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~---------~tiEe~i 180 (205)
T Consensus 497 T-AAL~AGVDFP--ASQVIFEsLaMG~~WLs~~EF~QM~GRA-----GRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA 568 (830)
T COG1202 497 T-AALAAGVDFP--ASQVIFESLAMGIEWLSVREFQQMLGRA-----GRPDYHDRGKVYLLVEPGKKYHASMEETEDEVA 568 (830)
T ss_pred H-HHHHCCCCCC--HHHHHHHHHHCCCCCCCHHHHHHHHCCC-----CCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHH
T ss_conf 2-4564478875--1899999987104327899999985046-----998723373399995577011112135189999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780130|r 181 LQRLRT 186 (205)
Q Consensus 181 ~~~l~~ 186 (205)
T Consensus 569 ~kLL~s 574 (830)
T COG1202 569 FKLLES 574 (830)
T ss_pred HHHHCC
T ss_conf 999607