HHsearch alignment for GI: 254780130 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=97.79  E-value=0.0001  Score=45.69  Aligned_cols=126  Identities=20%  Similarity=0.353  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHHH------CCC--CCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf             2343349999861------489--971105789999999876530----------4778234899999972789869997
Q gi|254780130|r   53 DEKIKALEVIIEK------ANA--APIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA  114 (205)
Q Consensus        53 ~~Kl~~l~~ii~~------~~~--~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~  114 (205)
T Consensus       417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT  496 (830)
T COG1202         417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT  496 (830)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf             67778999999999754411376773699942166699999886107866654437986788888999976087555764


Q ss_pred             CHHHHHHHHHHHHHCCEEEEECC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC---------CCHHHHH
Q ss_conf             21443233224320675897268-----999888022555576665420265775399999838---------8958999
Q gi|254780130|r  115 HPASCGHGLNLQYGGNILVFFSL-----WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ---------NTIDELV  180 (205)
Q Consensus       115 ~~~a~g~GlnL~~a~~~vI~~~~-----~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~---------~tiEe~i  180 (205)
T Consensus       497 T-AAL~AGVDFP--ASQVIFEsLaMG~~WLs~~EF~QM~GRA-----GRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA  568 (830)
T COG1202         497 T-AALAAGVDFP--ASQVIFESLAMGIEWLSVREFQQMLGRA-----GRPDYHDRGKVYLLVEPGKKYHASMEETEDEVA  568 (830)
T ss_pred             H-HHHHCCCCCC--HHHHHHHHHHCCCCCCCHHHHHHHHCCC-----CCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHH
T ss_conf             2-4564478875--1899999987104327899999985046-----998723373399995577011112135189999


Q ss_pred             HHHHHH
Q ss_conf             999999
Q gi|254780130|r  181 LQRLRT  186 (205)
Q Consensus       181 ~~~l~~  186 (205)
T Consensus       569 ~kLL~s  574 (830)
T COG1202         569 FKLLES  574 (830)
T ss_pred             HHHHCC
T ss_conf             999607