HHsearch alignment for GI: 254780130 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=93.40 E-value=0.55 Score=24.98 Aligned_cols=114 Identities=12% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHH----HHCCCCCEEEECHHHHHHHHHHHHHCCEE
Q ss_conf 899711057899999998765304778----------2348999999----72789869997214432332243206758
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE----WNEGKIPLLFAHPASCGHGLNLQYGGNIL 132 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~----f~~~~~~Vll~~~~a~g~GlnL~~a~~~v 132 (205)
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV-aTQVIEagvDid--fd~m 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVV-ATQVIEAGVDID--FDVL 515 (733)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCEEEEEECCC--CCEE
T ss_conf 5882899992789999999998555895799886355766999999998887537862999-834599886266--6846
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9726899988802255557666542026--577539999983889589999999999999
Q gi|254780130|r 133 VFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 133 I~~~~~~n~~~~~Qa~~Ri~~~r~hR~G--Q~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
T Consensus 516 I-Te~-aPidSLIQR~GRv-----~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 516 I-TEL-APIDSLIQRAGRV-----NRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred E-ECC-CCHHHHHHHHHHH-----HHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 6-347-8756799987777-----415666687169983466777610332210434113