HHsearch alignment for GI: 254780130 and conserved domain: COG1204
>COG1204 Superfamily II helicase [General function prediction only].
Probab=96.48 E-value=0.011 Score=34.42 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE----EEC-----CCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 348999999727898699972144323322432067589----726-----89998880225555766654202657753
Q gi|254780130|r 95 DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV----FFS-----LWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205)
Q Consensus 95 ~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI----~~~-----~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205)
T Consensus 327 ~~R~~vE~~Fr~g~ikVlv~TpT-LA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GR-----AGRPg~d~-~ 398 (766)
T COG1204 327 EDRQLVEDAFRKGKIKVLVSTPT-LAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGR-----AGRPGYDD-Y 398 (766)
T ss_pred HHHHHHHHHHHCCCCEEEEECHH-HHHHCCCC-CEEEEEEEEEEECCCCCEEECCHHHHHHCCCC-----CCCCCCCC-C
T ss_conf 89999999986698549995457-76216886-32899910387757788477764148655676-----79987577-7
Q ss_pred EEEEEEECCCHHHHHHH
Q ss_conf 99999838895899999
Q gi|254780130|r 166 FVYYLIAQNTIDELVLQ 182 (205)
Q Consensus 166 ~v~~l~~~~tiEe~i~~ 182 (205)
T Consensus 399 G~~~i~~~~~~~~~~~~ 415 (766)
T COG1204 399 GEAIILATSHDELEYLA 415 (766)
T ss_pred CCEEEEECCCCCHHHHH
T ss_conf 82799935863155899