HHsearch alignment for GI: 254780130 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=95.80 E-value=0.082 Score=29.56 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=73.5
Q ss_pred HHH-HHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHH----HCC------CCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 433-499998614--8997110578999999987653----047------782348999999727898699972144323
Q gi|254780130|r 55 KIK-ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----PQG------RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 55 Kl~-~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~----~~~------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
T Consensus 289 kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-ILER 367 (441)
T COG4098 289 KLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-ILER 367 (441)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEE-HHHC
T ss_conf 477899999999874388289992505889999999986188642156533670178999998758638999844-0332
Q ss_pred HHHHHHHCCEEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 32243206758972689--99888022555576665420265775399999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~--~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l 170 (205)
T Consensus 368 GVTfp~-vdV~Vlgaeh~vfTesaLVQIaGRvG--Rs~~~-PtGdv~FFH~ 414 (441)
T COG4098 368 GVTFPN-VDVFVLGAEHRVFTESALVQIAGRVG--RSLER-PTGDVLFFHY 414 (441)
T ss_pred CCCCCC-CEEEEECCCCCCCCHHHHHHHHHHCC--CCCCC-CCCCEEEEEC
T ss_conf 664356-23999547764201889999752316--78768-9875899964