HHsearch alignment for GI: 254780130 and conserved domain: PRK04837
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.30 E-value=4.1e-11 Score=81.04 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
T Consensus 240 ~~~K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaT-DvaaR 318 (423)
T PRK04837 240 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVAT-DVAAR 318 (423)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf 27799999999984088746886162888999999997659817872254579999999999976999899870-04327
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 322432067589726899988802255557666542026577539999983889
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~t 175 (205)
T Consensus 319 GLDi~-~V~~VInyD~P~~~~~YiHRiGRTg-----RaG~~G~--aitf~~~~~ 364 (423)
T PRK04837 319 GLHIP-DVTHVFNYDLPDDCEDYVHRIGRTG-----RAGASGH--SISFACEEY 364 (423)
T ss_pred CCCCC-CCCEEEEECCCCCHHHEECCCCHHH-----CCCCCEE--EEEEECHHH
T ss_conf 77726-7988999699897455100465412-----7899468--999873999