HHsearch alignment for GI: 254780130 and conserved domain: PRK10590
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional.
Probab=99.37 E-value=6.5e-12 Score=85.44 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
T Consensus 230 ~~k~~~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaT-DvaaRG 308 (457)
T PRK10590 230 KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-DIAARG 308 (457)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCC
T ss_conf 7899999999861586633588411999999999985569982323247899999999999986998299957-701155
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
T Consensus 309 iDi~-~V~~VInyD~P~~~e~YvHRiGRTG-----RaG~~G~--ait~v~~~--e~~~~~~ie~~ 363 (457)
T PRK10590 309 LDIE-ELPHVVNYELPNVPEDYVHRIGRTG-----RAAATGE--ALSLVCVD--EHKLLRDIEKL 363 (457)
T ss_pred CCCC-CCCEEEEECCCCCHHHEECCCCCCC-----CCCCCEE--EEEEECHH--HHHHHHHHHHH
T ss_conf 6635-6887999389997445002267060-----5899536--99986689--99999999999