HHsearch alignment for GI: 254780130 and conserved domain: PRK10689
>PRK10689 transcription-repair coupling factor; Provisional.
Probab=92.97 E-value=0.65 Score=24.61 Aligned_cols=112 Identities=12% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCEEEHHHHHHHHHHH----HHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf 899711057899999998----765304778--------23489999997278986999721443233224320675897
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARL----QKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l----~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205)
T Consensus 808 rggq~~~~~~~~~~i~~~~~~~~~~~p~~~~~~~hg~m~~~~~e~~m~~f~~~~~~~l~~tt-iie~g~dip~-ant~ii 885 (1148)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGIDIPT-ANTIII 885 (1148)
T ss_pred HCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-EEECCCCCCC-CCEEEE
T ss_conf 18808999532541999999999748777189998999989999999999759988999897-8765866778-847999
Q ss_pred ECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 268-999888022555576665420265775399999838-89589999999999
Q gi|254780130|r 135 FSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTK 187 (205)
Q Consensus 135 ~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~-~tiEe~i~~~l~~K 187 (205)
T Consensus 886 ~~a~~~gl~ql~qlrgrvg-----r~~--~~ayaYll~~~~~~lt~~A~kRL~ai 933 (1148)
T PRK10689 886 ERADHFGLAQLHQLRGRVG-----RSH--HQAYAWLLTPHPKAMTTDAQKRLEAI 933 (1148)
T ss_pred ECHHHCCHHHHHHHCCCCC-----CCC--CEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 7532145577775436557-----788--70799998678777898999999999