HHsearch alignment for GI: 254780130 and conserved domain: PRK11634
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional.
Probab=99.24 E-value=7.6e-11 Score=79.56 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
T Consensus 229 ~~~K~~aL~~~L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaT-DvaAR 307 (629)
T PRK11634 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT-DVAAR 307 (629)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCC
T ss_conf 24579999999861588848999822788999999999769965765689999999999999975999889878-62105
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
T Consensus 308 GLDi~~-V~~VINyDlP~d~e~YVHRiGRT-----GRaGr~G~A--itfv~~--~e~~~l~~ier 362 (629)
T PRK11634 308 GLDVER-ISLVVNYDIPMDSESYVHRIGRT-----GRAGRAGRA--LLFVEN--RERRLLRNIER 362 (629)
T ss_pred CCCCCC-CCEEEEECCCCCHHHCCCCCCCC-----CCCCCCEEE--EEEECH--HHHHHHHHHHH
T ss_conf 577256-88899968989743401025833-----168996469--998888--99999999999