Query gi|254780130|ref|YP_003064543.1| hypothetical protein CLIBASIA_00045 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 205
No_of_seqs 122 out of 3331
Neff 7.3
Searched_HMMs 39220
Date Sun May 29 15:28:53 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780130.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0392 consensus 100.0 3.1E-39 7.8E-44 236.6 14.1 195 2-202 1233-1482(1549)
2 KOG0385 consensus 100.0 4.4E-37 1.1E-41 224.7 15.6 168 25-198 434-623 (971)
3 KOG0384 consensus 100.0 6.7E-36 1.7E-40 218.1 15.8 192 2-199 614-836 (1373)
4 KOG0389 consensus 100.0 7.8E-36 2E-40 217.8 11.3 143 52-200 759-914 (941)
5 KOG0390 consensus 100.0 8E-34 2E-38 206.7 13.4 168 25-198 526-731 (776)
6 KOG0387 consensus 100.0 2E-33 5E-38 204.5 13.1 168 24-197 491-681 (923)
7 COG0553 HepA Superfamily II DN 100.0 9E-33 2.3E-37 200.8 15.5 170 22-197 638-845 (866)
8 KOG1002 consensus 100.0 1.4E-31 3.6E-36 194.2 15.0 142 53-200 619-775 (791)
9 KOG4439 consensus 100.0 1.9E-31 4.9E-36 193.5 15.2 139 52-196 727-880 (901)
10 KOG0391 consensus 100.0 4.5E-31 1.1E-35 191.5 12.4 145 45-195 1251-1408(1958)
11 KOG0388 consensus 100.0 3.6E-30 9.1E-35 186.5 11.1 140 52-197 1026-1177(1185)
12 PRK04914 ATP-dependent helicas 100.0 2.5E-28 6.4E-33 176.2 12.8 144 52-202 477-640 (955)
13 KOG1015 consensus 100.0 2.6E-29 6.7E-34 181.7 7.4 146 50-201 1122-1304(1567)
14 KOG0386 consensus 100.0 5.8E-28 1.5E-32 174.2 11.2 189 3-197 648-861 (1157)
15 KOG1000 consensus 99.9 2.4E-27 6.2E-32 170.8 9.6 136 53-194 471-623 (689)
16 KOG1001 consensus 99.9 3.9E-27 1E-31 169.6 5.0 138 53-196 521-672 (674)
17 cd00079 HELICc Helicase superf 99.9 1.6E-21 4E-26 138.7 8.0 112 50-168 8-131 (131)
18 KOG1016 consensus 99.8 5.8E-22 1.5E-26 141.0 4.3 127 67-199 718-874 (1387)
19 PRK13766 Hef nuclease; Provisi 99.8 4.5E-17 1.1E-21 114.0 14.1 139 52-200 344-504 (764)
20 COG1111 MPH1 ERCC4-like helica 99.7 1.9E-16 4.9E-21 110.5 13.8 141 50-200 344-507 (542)
21 KOG0298 consensus 99.7 7E-18 1.8E-22 118.5 5.6 137 46-190 1195-1342(1394)
22 PRK11192 ATP-dependent RNA hel 99.4 2.3E-12 5.9E-17 87.9 11.2 124 53-187 232-365 (417)
23 PRK01297 ATP-dependent RNA hel 99.4 2.9E-12 7.5E-17 87.4 11.1 125 53-188 317-451 (472)
24 PRK11776 ATP-dependent RNA hel 99.4 5.8E-12 1.5E-16 85.7 10.8 124 52-186 226-359 (459)
25 PRK10590 ATP-dependent RNA hel 99.4 6.5E-12 1.7E-16 85.4 10.3 124 53-187 230-363 (457)
26 PRK04537 ATP-dependent RNA hel 99.4 1.3E-11 3.2E-16 83.9 11.2 114 52-174 241-364 (574)
27 PRK04837 ATP-dependent RNA hel 99.3 4.1E-11 1E-15 81.0 11.2 115 52-175 240-364 (423)
28 KOG0354 consensus 99.3 3.3E-10 8.5E-15 76.0 15.7 136 51-199 392-553 (746)
29 PRK11634 ATP-dependent RNA hel 99.2 7.6E-11 1.9E-15 79.6 10.0 124 52-186 229-362 (629)
30 pfam00271 Helicase_C Helicase 99.2 9.9E-12 2.5E-16 84.5 5.2 66 88-160 13-78 (78)
31 PTZ00110 helicase; Provisional 99.2 1.9E-10 4.9E-15 77.3 8.8 116 52-176 411-537 (602)
32 KOG0331 consensus 99.1 2.7E-10 7E-15 76.5 8.5 126 53-187 323-463 (519)
33 smart00490 HELICc helicase sup 99.1 5.4E-11 1.4E-15 80.4 4.8 66 88-160 17-82 (82)
34 COG0513 SrmB Superfamily II DN 99.1 9.4E-10 2.4E-14 73.5 9.9 125 54-188 259-393 (513)
35 KOG0333 consensus 99.1 5.6E-10 1.4E-14 74.7 8.6 122 52-184 501-632 (673)
36 PRK11057 ATP-dependent DNA hel 99.0 2.1E-09 5.3E-14 71.6 9.7 109 54-169 222-340 (607)
37 KOG0330 consensus 99.0 2.5E-09 6.3E-14 71.2 9.0 121 54-185 286-416 (476)
38 KOG0328 consensus 98.8 2.2E-08 5.6E-13 65.9 8.8 122 55-187 253-384 (400)
39 COG1061 SSL2 DNA or RNA helica 98.8 8.3E-08 2.1E-12 62.7 10.1 127 53-186 267-406 (442)
40 PRK13767 ATP-dependent helicas 98.7 1.6E-07 4.1E-12 61.1 9.4 101 59-167 277-393 (878)
41 KOG0383 consensus 98.5 2.5E-07 6.4E-12 60.1 6.2 120 2-122 554-696 (696)
42 KOG0332 consensus 98.5 9.6E-07 2.5E-11 56.8 8.9 125 52-186 314-454 (477)
43 TIGR00603 rad25 DNA repair hel 98.5 3.6E-07 9.1E-12 59.2 5.8 125 52-178 494-634 (756)
44 KOG0350 consensus 98.4 1.9E-06 4.8E-11 55.2 9.0 122 55-187 416-551 (620)
45 COG0514 RecQ Superfamily II DN 98.4 6.2E-06 1.6E-10 52.4 11.3 103 65-176 227-339 (590)
46 KOG0344 consensus 98.4 3.2E-06 8.1E-11 54.0 8.9 112 53-173 372-494 (593)
47 KOG0336 consensus 98.4 2.6E-06 6.7E-11 54.4 8.4 126 52-186 448-586 (629)
48 KOG0351 consensus 98.3 2.2E-06 5.7E-11 54.8 6.7 136 29-171 438-591 (941)
49 PRK01172 ski2-like helicase; P 98.3 1.5E-05 3.8E-10 50.3 10.1 106 67-181 235-384 (674)
50 TIGR01389 recQ ATP-dependent D 98.2 3.7E-06 9.4E-11 53.6 6.6 131 53-190 210-361 (607)
51 KOG0348 consensus 98.2 1.9E-05 4.7E-10 49.7 9.9 89 89-188 478-566 (708)
52 KOG1123 consensus 98.2 1.7E-05 4.2E-10 50.0 9.6 124 53-179 526-658 (776)
53 KOG0343 consensus 98.2 2E-05 5.2E-10 49.5 10.0 126 53-188 298-435 (758)
54 KOG0326 consensus 98.2 3.6E-06 9.1E-11 53.7 5.8 124 53-187 307-440 (459)
55 KOG0341 consensus 98.2 3.6E-06 9.1E-11 53.7 5.3 120 53-182 407-536 (610)
56 PRK00254 ski2-like helicase; P 98.2 4.7E-05 1.2E-09 47.5 10.9 83 91-182 303-394 (717)
57 COG1201 Lhr Lhr-like helicases 98.1 4.8E-05 1.2E-09 47.5 10.5 116 55-182 242-368 (814)
58 KOG0335 consensus 98.1 4.8E-05 1.2E-09 47.5 9.3 127 52-186 312-458 (482)
59 KOG0334 consensus 98.1 3.2E-05 8E-10 48.5 8.4 124 52-184 596-732 (997)
60 TIGR00614 recQ_fam ATP-depende 98.0 1.9E-05 4.9E-10 49.7 6.7 119 56-181 222-358 (497)
61 KOG0338 consensus 98.0 9.8E-05 2.5E-09 45.7 9.9 113 61-184 419-541 (691)
62 PRK02362 ski2-like helicase; P 97.9 0.00022 5.5E-09 43.8 11.0 76 91-175 312-397 (736)
63 KOG0327 consensus 97.9 4.3E-05 1.1E-09 47.7 6.5 120 53-185 250-379 (397)
64 KOG0340 consensus 97.9 4.9E-05 1.2E-09 47.4 6.7 91 67-161 253-353 (442)
65 KOG4284 consensus 97.9 7E-05 1.8E-09 46.6 7.4 112 54-174 258-379 (980)
66 KOG0342 consensus 97.8 0.00024 6.2E-09 43.5 9.8 122 53-185 314-446 (543)
67 PRK09751 putative ATP-dependen 97.8 0.00014 3.4E-09 45.0 7.8 109 67-181 243-394 (1490)
68 COG1202 Superfamily II helicas 97.8 0.0001 2.6E-09 45.7 7.2 126 53-186 417-574 (830)
69 KOG0345 consensus 97.7 0.00025 6.5E-09 43.4 8.0 108 53-167 240-359 (567)
70 KOG0953 consensus 97.6 0.00058 1.5E-08 41.5 8.5 99 67-173 357-476 (700)
71 KOG0347 consensus 97.5 0.00049 1.2E-08 41.9 7.2 120 66-195 462-612 (731)
72 KOG0339 consensus 97.5 0.00043 1.1E-08 42.2 6.5 116 53-177 452-578 (731)
73 KOG1513 consensus 97.4 0.0004 1E-08 42.4 5.6 83 101-190 850-940 (1300)
74 KOG0349 consensus 97.4 0.00026 6.6E-09 43.4 4.5 95 63-161 500-607 (725)
75 KOG0352 consensus 97.2 0.0009 2.3E-08 40.4 5.7 93 71-170 258-360 (641)
76 PRK10917 ATP-dependent DNA hel 97.1 0.0047 1.2E-07 36.4 8.4 123 53-185 450-595 (677)
77 KOG0353 consensus 97.0 0.00081 2.1E-08 40.7 4.1 104 67-172 316-467 (695)
78 PRK11448 hsdR type I restricti 97.0 0.0017 4.4E-08 38.9 5.5 94 58-152 690-800 (1126)
79 pfam11496 HDA2-3 Class II hist 96.8 0.0058 1.5E-07 35.9 7.0 147 28-183 58-235 (278)
80 KOG0952 consensus 96.6 0.012 3.2E-07 34.1 7.4 116 54-178 337-495 (1230)
81 COG1204 Superfamily II helicas 96.5 0.011 2.8E-07 34.4 6.5 80 95-182 327-415 (766)
82 TIGR01587 cas3_core CRISPR-ass 96.1 0.017 4.4E-07 33.3 5.8 116 54-175 253-396 (424)
83 COG4098 comFA Superfamily II D 95.8 0.082 2.1E-06 29.6 8.2 111 55-170 289-414 (441)
84 COG1205 Distinct helicase fami 95.8 0.1 2.5E-06 29.1 8.6 120 55-183 291-431 (851)
85 TIGR02621 cas3_GSU0051 CRISPR- 95.6 0.008 2E-07 35.2 2.4 94 66-168 309-428 (975)
86 TIGR00643 recG ATP-dependent D 95.2 0.03 7.6E-07 32.0 4.1 99 52-152 507-633 (721)
87 PRK12899 secA preprotein trans 95.0 0.25 6.4E-06 26.9 10.3 110 52-168 550-677 (969)
88 PRK12906 secA preprotein trans 94.6 0.32 8.1E-06 26.3 9.9 110 52-168 422-578 (823)
89 COG4096 HsdR Type I site-speci 94.5 0.054 1.4E-06 30.6 4.1 95 58-153 412-524 (875)
90 PRK12903 secA preprotein trans 94.1 0.42 1.1E-05 25.7 10.6 111 52-168 408-535 (885)
91 PRK12900 secA preprotein trans 93.9 0.45 1.1E-05 25.5 10.3 111 52-168 536-663 (983)
92 PRK09200 preprotein translocas 93.9 0.45 1.2E-05 25.5 10.2 110 52-168 414-541 (799)
93 PRK13103 secA preprotein trans 93.9 0.46 1.2E-05 25.4 9.9 114 49-168 428-587 (913)
94 COG1200 RecG RecG-like helicas 93.8 0.16 4E-06 28.0 5.2 107 53-166 456-585 (677)
95 KOG0949 consensus 93.7 0.33 8.3E-06 26.3 6.7 81 97-188 977-1059(1330)
96 TIGR00596 rad1 DNA repair prot 93.5 0.14 3.6E-06 28.2 4.6 81 111-197 543-627 (939)
97 COG1203 CRISPR-associated heli 93.4 0.55 1.4E-05 25.0 7.6 114 67-190 439-568 (733)
98 PRK12898 secA preprotein trans 93.3 0.57 1.4E-05 24.9 10.5 112 51-168 469-597 (673)
99 PRK12901 secA preprotein trans 93.1 0.62 1.6E-05 24.7 9.6 112 51-168 613-741 (1111)
100 PRK10689 transcription-repair 93.0 0.65 1.6E-05 24.6 8.7 112 67-187 808-933 (1148)
101 KOG0346 consensus 92.9 0.28 7E-06 26.6 5.3 98 68-173 268-409 (569)
102 KOG0951 consensus 92.8 0.27 7E-06 26.7 5.2 88 61-151 539-684 (1674)
103 TIGR03158 cas3_cyano CRISPR-as 92.5 0.38 9.8E-06 25.9 5.6 79 66-151 270-356 (357)
104 KOG0337 consensus 91.9 0.3 7.5E-06 26.5 4.5 113 52-173 244-367 (529)
105 COG1197 Mfd Transcription-repa 91.8 0.91 2.3E-05 23.8 9.4 107 71-187 806-927 (1139)
106 PRK12326 preprotein translocas 91.6 0.97 2.5E-05 23.6 10.3 111 52-168 420-554 (775)
107 PRK13107 preprotein translocas 91.4 1 2.6E-05 23.5 10.2 111 52-168 431-587 (908)
108 PRK13104 secA preprotein trans 91.3 1 2.7E-05 23.4 9.7 111 52-168 426-583 (896)
109 COG1110 Reverse gyrase [DNA re 90.5 0.77 2E-05 24.2 5.5 84 54-138 322-416 (1187)
110 KOG0950 consensus 90.3 0.47 1.2E-05 25.3 4.2 64 91-162 531-599 (1008)
111 KOG0948 consensus 90.0 0.72 1.8E-05 24.3 5.0 75 101-184 465-548 (1041)
112 PRK08074 bifunctional ATP-depe 89.0 1.6 4.2E-05 22.4 6.7 81 58-139 747-839 (932)
113 PRK12904 preprotein translocas 88.0 1.9 4.9E-05 22.0 9.6 111 52-168 412-568 (833)
114 TIGR01407 dinG_rel DnaQ family 87.5 2.1 5.3E-05 21.8 7.7 128 67-200 765-942 (944)
115 TIGR00580 mfd transcription-re 87.4 0.9 2.3E-05 23.8 4.0 108 67-184 721-842 (997)
116 COG4889 Predicted helicase [Ge 86.7 1 2.6E-05 23.5 3.9 44 107-152 527-570 (1518)
117 TIGR01054 rgy reverse gyrase; 86.7 1 2.6E-05 23.5 3.9 83 56-139 349-446 (1843)
118 PRK09401 reverse gyrase; Revie 86.3 2 5E-05 21.9 5.2 81 57-138 317-408 (1176)
119 KOG0947 consensus 86.1 1.9 4.9E-05 22.0 5.1 69 98-175 645-723 (1248)
120 PRK11664 ATP-dependent RNA hel 83.9 1.9 4.8E-05 22.1 4.2 111 59-177 204-342 (812)
121 COG1199 DinG Rad3-related DNA 83.4 3.3 8.5E-05 20.7 6.1 83 56-140 468-560 (654)
122 COG0653 SecA Preprotein transl 82.8 3.5 9E-05 20.5 6.9 103 53-162 412-535 (822)
123 pfam08469 NPHI_C Nucleoside tr 81.3 4 0.0001 20.2 5.4 38 58-95 30-68 (148)
124 TIGR03117 cas_csf4 CRISPR-asso 80.6 4.2 0.00011 20.1 7.3 85 58-143 461-565 (636)
125 pfam06862 DUF1253 Protein of u 78.4 5 0.00013 19.7 11.8 134 52-190 272-422 (435)
126 PRK05298 excinuclease ABC subu 72.5 7.3 0.00019 18.8 10.6 115 67-189 445-574 (657)
127 TIGR00631 uvrb excinuclease AB 70.9 7.9 0.0002 18.6 7.9 125 58-191 436-577 (667)
128 COG0556 UvrB Helicase subunit 69.8 8.4 0.00021 18.4 10.1 115 67-189 445-574 (663)
129 CHL00122 secA preprotein trans 67.6 9.3 0.00024 18.2 10.0 72 52-125 406-490 (891)
130 PRK07246 bifunctional ATP-depe 66.2 10 0.00025 18.0 6.6 74 65-140 645-726 (820)
131 KOG0329 consensus 63.2 3.7 9.4E-05 20.4 1.3 65 114-187 303-367 (387)
132 COG1198 PriA Primosomal protei 57.2 15 0.00037 17.1 6.9 68 96-169 522-600 (730)
133 KOG4150 consensus 56.7 15 0.00038 17.1 10.0 84 90-182 565-648 (1034)
134 TIGR01807 CM_P2 chorismate mut 56.5 15 0.00037 17.1 3.4 26 174-200 9-34 (79)
135 TIGR00963 secA preprotein tran 49.0 20 0.00051 16.3 7.5 111 13-124 371-500 (904)
136 PRK11131 ATP-dependent RNA hel 47.7 21 0.00054 16.2 5.8 104 65-177 284-414 (1295)
137 COG4581 Superfamily II RNA hel 44.5 24 0.00061 15.9 8.0 72 97-176 459-539 (1041)
138 PRK12902 secA preprotein trans 40.3 28 0.00071 15.6 9.9 73 52-125 426-510 (946)
139 smart00492 HELICc3 helicase su 37.0 32 0.0008 15.3 3.1 56 88-144 27-84 (141)
140 TIGR01664 DNA-3'-Pase DNA 3'-p 35.6 15 0.00039 17.0 0.9 39 40-78 39-81 (239)
141 pfam10879 DUF2674 Protein of u 34.5 30 0.00077 15.4 2.2 26 66-91 3-28 (67)
142 TIGR02667 moaB_proteo molybden 34.1 31 0.0008 15.3 2.2 17 105-124 60-76 (163)
143 PRK05580 primosome assembly pr 33.1 37 0.00093 14.9 7.2 66 95-167 490-567 (699)
144 TIGR00095 TIGR00095 putative m 32.7 22 0.00056 16.2 1.2 23 130-152 133-157 (210)
145 KOG0442 consensus 32.1 38 0.00097 14.8 5.4 60 129-196 545-605 (892)
146 PRK11747 dinG ATP-dependent DN 30.5 41 0.001 14.7 6.4 78 60-140 528-617 (697)
147 TIGR01169 rplA_bact ribosomal 27.8 45 0.0012 14.4 2.7 100 69-181 71-183 (227)
148 pfam03602 Cons_hypoth95 Conser 26.4 41 0.001 14.7 1.7 22 131-152 115-136 (181)
149 pfam08129 Antimicrobial17 Alph 25.4 49 0.0013 14.2 2.0 20 1-20 1-20 (57)
150 PRK09694 hypothetical protein; 24.3 53 0.0014 14.0 6.7 102 60-167 552-678 (878)
151 smart00491 HELICc2 helicase su 22.7 21 0.00055 16.2 -0.3 63 88-150 24-91 (142)
152 KOG0795 consensus 21.3 27 0.00068 15.7 -0.0 56 124-191 151-213 (262)
153 pfam09445 Methyltransf_15 RNA 20.6 50 0.0013 14.2 1.3 15 108-122 71-85 (165)
No 1
>KOG0392 consensus
Probab=100.00 E-value=3.1e-39 Score=236.62 Aligned_cols=195 Identities=22% Similarity=0.304 Sum_probs=158.4
Q ss_pred HHHHHHHHHHHHHH----CCCCE----EHHHHHHHHHHHHHHCCCCHHCCCCC-----------------CCCCCCHHHH
Q ss_conf 35899999999973----57832----09999999999988607700034456-----------------5420572343
Q gi|254780130|r 2 KQYHKFQRELYCDL----QGENI----EAFNSASKTVKCLQLANGAVYYDEEK-----------------HWKEVHDEKI 56 (205)
Q Consensus 2 k~Y~~l~~~~~~~~----~~~~i----~a~~~~~~~~kL~Ql~~g~~~~d~~~-----------------~~~~~~~~Kl 56 (205)
|.|++|.+..-... ++++. ...|....+.+|+.+|+||...-... --...|++|+
T Consensus 1233 kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl 1312 (1549)
T KOG0392 1233 KLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKL 1312 (1549)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_conf 99999988750352003464321057514889999999998548964442777502999987887740147776535267
Q ss_pred HHHHHHHHH----------------CCCCCEEEHHHHHHHHHHHHH-------------HHHCCCCHHHHHHHHHHHHCC
Q ss_conf 349999861----------------489971105789999999876-------------530477823489999997278
Q gi|254780130|r 57 KALEVIIEK----------------ANAAPIIVAYHFNSDLARLQK-------------AFPQGRTLDKDPCTIQEWNEG 107 (205)
Q Consensus 57 ~~l~~ii~~----------------~~~~kviVf~~f~~~l~~l~~-------------~~~~~~~~~~r~~~i~~f~~~ 107 (205)
.+|++++.+ ..+.+++|||||+..++.+++ ++.|+.+...|.+++++||++
T Consensus 1313 ~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~D 1392 (1549)
T KOG0392 1313 SALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNED 1392 (1549)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCHHCCCEEEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCC
T ss_conf 89999999817898875333671021155168764077799999999865114751699734888907779999971689
Q ss_pred -CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf -9869997214432332243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 108 -KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 108 -~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
.+.||++++..||.||||| +|+++||++-+|||....||+|| |||||||+.|+||+|||+||.||+|+..++-
T Consensus 1393 ptIDvLlLTThVGGLGLNLT-GADTVVFvEHDWNPMrDLQAMDR-----AHRIGQKrvVNVyRlItrGTLEEKVMgLQkF 1466 (1549)
T KOG0392 1393 PTIDVLLLTTHVGGLGLNLT-GADTVVFVEHDWNPMRDLQAMDR-----AHRIGQKRVVNVYRLITRGTLEEKVMGLQKF 1466 (1549)
T ss_pred CCEEEEEEEEECCCCCCCCC-CCCEEEEEECCCCCHHHHHHHHH-----HHHHCCCEEEEEEEEHHCCCHHHHHHHHHHH
T ss_conf 85138999620045322467-87558997268883245788778-----8862673156666302306589987657888
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 9999999999998653
Q gi|254780130|r 187 KSTIQDLLLNALKKET 202 (205)
Q Consensus 187 K~~~~~~~l~~~~~e~ 202 (205)
|..+++.|++..+..+
T Consensus 1467 KmnvAntvInqqNasl 1482 (1549)
T KOG0392 1467 KMNVANTVINQQNASL 1482 (1549)
T ss_pred HHHHHHHHHHCCCCCC
T ss_conf 6688888873214664
No 2
>KOG0385 consensus
Probab=100.00 E-value=4.4e-37 Score=224.69 Aligned_cols=168 Identities=17% Similarity=0.316 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHCCCCHHCCCCCC--CC------CCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHH--------
Q ss_conf 99999999886077000344565--42------0572343349999861--489971105789999999876--------
Q gi|254780130|r 25 SASKTVKCLQLANGAVYYDEEKH--WK------EVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK-------- 86 (205)
Q Consensus 25 ~~~~~~kL~Ql~~g~~~~d~~~~--~~------~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~-------- 86 (205)
..--++-||+-|+||-.++.-.+ .. ...+.|+-.|..++.. ..|.+|+||||++..++.|+.
T Consensus 434 L~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ 513 (971)
T KOG0385 434 LQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYE 513 (971)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHCCCCEEHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCCCE
T ss_conf 99999999974699641488888999886217875476111699888999848976998269888999999998751752
Q ss_pred --HHHCCCCHHHHHHHHHHHHCCC--CCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf --5304778234899999972789--869997214432332243206758972689998880225555766654202657
Q gi|254780130|r 87 --AFPQGRTLDKDPCTIQEWNEGK--IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162 (205)
Q Consensus 87 --~~~~~~~~~~r~~~i~~f~~~~--~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205)
++.|+..-+.|..+++.|+.++ .-||++|+.|||.||||+ +|++||+||.+|||....||.+| ||||||+
T Consensus 514 ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~-aADtVIlyDSDWNPQ~DLQAmDR-----aHRIGQ~ 587 (971)
T KOG0385 514 YCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLT-AADTVILYDSDWNPQVDLQAMDR-----AHRIGQK 587 (971)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCC-CCCEEEEECCCCCCHHHHHHHHH-----HHHCCCC
T ss_conf 68723888707899999863899762589998504666630222-36479996689982143788998-----8860787
Q ss_pred CCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 753999998388958999999999999999999999
Q gi|254780130|r 163 RAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198 (205)
Q Consensus 163 ~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~ 198 (205)
++|.||+|+|++||||+|+++...|+.+...|+..-
T Consensus 588 K~V~V~RLitentVEe~IveRA~~KL~Ld~~VIq~g 623 (971)
T KOG0385 588 KPVVVYRLITENTVEEKIVERAAAKLRLDKLVIQQG 623 (971)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCHHHHHHCCC
T ss_conf 715999975355189999999998744155301377
No 3
>KOG0384 consensus
Probab=100.00 E-value=6.7e-36 Score=218.14 Aligned_cols=192 Identities=16% Similarity=0.261 Sum_probs=150.9
Q ss_pred HHHHHHHHHHHHHH-CCCCEEHHHHHHHHHHHHHHCCCCHHCCCC-CCC---------------CCCCHHHHHHHHHHHH
Q ss_conf 35899999999973-578320999999999998860770003445-654---------------2057234334999986
Q gi|254780130|r 2 KQYHKFQRELYCDL-QGENIEAFNSASKTVKCLQLANGAVYYDEE-KHW---------------KEVHDEKIKALEVIIE 64 (205)
Q Consensus 2 k~Y~~l~~~~~~~~-~~~~i~a~~~~~~~~kL~Ql~~g~~~~d~~-~~~---------------~~~~~~Kl~~l~~ii~ 64 (205)
+.|+-+...-+..+ +|..-..++.+--|+-|+.-||||..++.- ..+ ..-++.|+-.|-.++-
T Consensus 614 ~yYk~ILtkN~~~LtkG~~g~~~~llNimmELkKccNHpyLi~gaee~~~~~~~~~~~d~~l~~lI~sSGKlVLLDKLL~ 693 (1373)
T KOG0384 614 QYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKMRDEALQALIQSSGKLVLLDKLLP 693 (1373)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHCCCEEEHHHHHH
T ss_conf 99999998539998366788980299999999986478000485888888765301467999999971685886987789
Q ss_pred H--CCCCCEEEHHHHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHCCCCC--EEEECHHHHHHHHHHHHHCC
Q ss_conf 1--489971105789999999876----------530477823489999997278986--99972144323322432067
Q gi|254780130|r 65 K--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGN 130 (205)
Q Consensus 65 ~--~~~~kviVf~~f~~~l~~l~~----------~~~~~~~~~~r~~~i~~f~~~~~~--Vll~~~~a~g~GlnL~~a~~ 130 (205)
. ..|.+|+||||.+..|+.|.. ++.|+..-+-|+.+++.|+.++.. |||+++.|||.||||+ +|+
T Consensus 694 rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AiDhFnap~SddFvFLLSTRAGGLGINLa-tAD 772 (1373)
T KOG0384 694 RLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLA-TAD 772 (1373)
T ss_pred HHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCC-CCC
T ss_conf 9861894599719999999999999997388611146876168899888743699988649998315676640224-466
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 589726899988802255557666542026577539999983889589999999999999999999998
Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNALK 199 (205)
Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~~ 199 (205)
+||.||-+|||....||..|+ |||||++.|+||+|+|+||+|+.|+++...|..+--+|+..+.
T Consensus 773 TVIIFDSDWNPQNDLQAqARa-----HRIGQkk~VnVYRLVTk~TvEeEilERAk~KmvLD~aVIQ~m~ 836 (1373)
T KOG0384 773 TVIIFDSDWNPQNDLQAQARA-----HRIGQKKHVNVYRLVTKNTVEEEILERAKLKMVLDHAVIQRMD 836 (1373)
T ss_pred EEEEECCCCCCCHHHHHHHHH-----HHHCCCCEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 699968999950578999988-----6606645478999745784489999999887515899987511
No 4
>KOG0389 consensus
Probab=100.00 E-value=7.8e-36 Score=217.80 Aligned_cols=143 Identities=22% Similarity=0.343 Sum_probs=126.6
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHH-CCCCCEEEECHHH
Q ss_conf 723433499998614--89971105789999999876----------5304778234899999972-7898699972144
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~----------~~~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a 118 (205)
.+.|...|..++.+. +|.+|+||+||+..++.|+. +|.|+..++-|+.+|+.|+ +.++.|||+|++|
T Consensus 759 dSgK~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKA 838 (941)
T KOG0389 759 DSGKCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKA 838 (941)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECC
T ss_conf 00327699998788761687799960888999999999986273378614886413899999862667755799986146
Q ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 32332243206758972689998880225555766654202657753999998388958999999999999999999999
Q gi|254780130|r 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198 (205)
Q Consensus 119 ~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~ 198 (205)
||.|||||. ||+||.+|.+|||-+..||+||+ ||.||+++|+||+|++++||||.|++....|+.+-..+.+.-
T Consensus 839 GG~GINLt~-An~VIihD~dFNP~dD~QAEDRc-----HRvGQtkpVtV~rLItk~TIEE~I~~lA~~KL~Le~~lt~~~ 912 (941)
T KOG0389 839 GGFGINLTC-ANTVIIHDIDFNPYDDKQAEDRC-----HRVGQTKPVTVYRLITKSTIEEGILRLAKTKLALEADLTEDG 912 (941)
T ss_pred CCCEECCCC-CCEEEEEECCCCCCCCCHHHHHH-----HHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 765021123-64589960577975520468888-----761785406999987457189999999987654555532576
Q ss_pred HH
Q ss_conf 86
Q gi|254780130|r 199 KK 200 (205)
Q Consensus 199 ~~ 200 (205)
++
T Consensus 913 k~ 914 (941)
T KOG0389 913 KG 914 (941)
T ss_pred CC
T ss_conf 43
No 5
>KOG0390 consensus
Probab=100.00 E-value=8e-34 Score=206.66 Aligned_cols=168 Identities=20% Similarity=0.325 Sum_probs=133.8
Q ss_pred HHHHHHHHHHHCCCCHHCC-------CCCC----------------CCCCCHHHHHHHHHHHHHC---CCCCEEEHHHHH
Q ss_conf 9999999988607700034-------4565----------------4205723433499998614---899711057899
Q gi|254780130|r 25 SASKTVKCLQLANGAVYYD-------EEKH----------------WKEVHDEKIKALEVIIEKA---NAAPIIVAYHFN 78 (205)
Q Consensus 25 ~~~~~~kL~Ql~~g~~~~d-------~~~~----------------~~~~~~~Kl~~l~~ii~~~---~~~kviVf~~f~ 78 (205)
++...++|+++|+||.... ++.. .....+.|+-.|..+++.. ...++++-++|+
T Consensus 526 ~l~~~~~L~k~cnhP~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~ 605 (776)
T KOG0390 526 ALELITKLKKLCNHPSLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYT 605 (776)
T ss_pred HHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCHH
T ss_conf 25588998987368776313322344412268576503212466655511566899999999998652231799962289
Q ss_pred HHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCC--CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHH
Q ss_conf 999998765----------3047782348999999727898--6999721443233224320675897268999888022
Q gi|254780130|r 79 SDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQ 146 (205)
Q Consensus 79 ~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~--~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Q 146 (205)
.+++.++.. +.|.....+|+.+++.||++.. .||++|.+|||+||||. +|+++|.||++|||+...|
T Consensus 606 ~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLi-GAsRlil~D~dWNPa~d~Q 684 (776)
T KOG0390 606 QTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLI-GASRLILFDPDWNPAVDQQ 684 (776)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCEEEC-CCCEEEEECCCCCCHHHHH
T ss_conf 999999999765384489973877668888998733599887418998544555763201-3403899579998236789
Q ss_pred HHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5555766654202657753999998388958999999999999999999999
Q gi|254780130|r 147 MIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNAL 198 (205)
Q Consensus 147 a~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~~ 198 (205)
|+.|+ +|.||+++|+||+|++.||+||+||+++..|..++..++++-
T Consensus 685 AmaR~-----~RdGQKk~v~iYrLlatGtiEEk~~qrq~~K~~lS~~v~~~~ 731 (776)
T KOG0390 685 AMARA-----WRDGQKKPVYIYRLLATGTIEEKIYQRQTHKEGLSSMVFDEE 731 (776)
T ss_pred HHHHH-----CCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECC
T ss_conf 99976-----457874268999963279813888999987600132477332
No 6
>KOG0387 consensus
Probab=100.00 E-value=2e-33 Score=204.49 Aligned_cols=168 Identities=21% Similarity=0.284 Sum_probs=139.6
Q ss_pred HHHHHHHHHHHHCCCCHHCCCC---C------CCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHH---
Q ss_conf 9999999998860770003445---6------5420572343349999861--489971105789999999876530---
Q gi|254780130|r 24 NSASKTVKCLQLANGAVYYDEE---K------HWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFP--- 89 (205)
Q Consensus 24 ~~~~~~~kL~Ql~~g~~~~d~~---~------~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~--- 89 (205)
+++.-+.-|+.+||||-.++.. . .-...++.|+..+..++.. ..|.+|+.|++-+..++.|+..+.
T Consensus 491 ~~l~Gi~iLrkICnHPdll~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~ 570 (923)
T KOG0387 491 NCLSGIDILRKICNHPDLLDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAK 570 (923)
T ss_pred CCEECHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHCC
T ss_conf 41215188886458941026764212358876789565216999999999986179779984137799999999987347
Q ss_pred --------CCCCHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf --------4778234899999972-7898699972144323322432067589726899988802255557666542026
Q gi|254780130|r 90 --------QGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160 (205)
Q Consensus 90 --------~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G 160 (205)
|..+...|...|++|| +....|||+++++||.|+||| +||+||.|||+|||....||.+|. +|||
T Consensus 571 ~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLT-gAnRVIIfDPdWNPStD~QAreRa-----wRiG 644 (923)
T KOG0387 571 GYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLT-GANRVIIFDPDWNPSTDNQARERA-----WRIG 644 (923)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEEECCCCCCCCCC-CCCEEEEECCCCCCCCCHHHHHHH-----HHHC
T ss_conf 8538971588862010578986367874579999730355411245-675589979999976425788888-----8635
Q ss_pred CCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5775399999838895899999999999999999999
Q gi|254780130|r 161 FKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205)
Q Consensus 161 Q~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205)
|+++|.||+|++.|||||.||.++--|..+.+.++..
T Consensus 645 QkkdV~VYRL~t~gTIEEkiY~rQI~Kq~Ltn~il~~ 681 (923)
T KOG0387 645 QKKDVVVYRLMTAGTIEEKIYHRQIFKQFLTNRILKN 681 (923)
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 7465599997327718999999999998888887429
No 7
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=9e-33 Score=200.84 Aligned_cols=170 Identities=25% Similarity=0.401 Sum_probs=143.3
Q ss_pred HHHHHHHHHHHHHHCCCCHHCCCCCCCCC---------------------CCH-HHHHHHHHHH-HH--CCCC--CEEEH
Q ss_conf 99999999999886077000344565420---------------------572-3433499998-61--4899--71105
Q gi|254780130|r 22 AFNSASKTVKCLQLANGAVYYDEEKHWKE---------------------VHD-EKIKALEVII-EK--ANAA--PIIVA 74 (205)
Q Consensus 22 a~~~~~~~~kL~Ql~~g~~~~d~~~~~~~---------------------~~~-~Kl~~l~~ii-~~--~~~~--kviVf 74 (205)
..+.+..+++|+|+|++|..+++...... -.+ .|+..+.+++ .. ..|. ++++|
T Consensus 638 ~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~~~~~~~kvlif 717 (866)
T COG0553 638 ELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLLEEGHYHKVLIF 717 (866)
T ss_pred HHHHHHHHHHHHHHHCCHHHHCCCCCCCCCHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEE
T ss_conf 77787889999987218644304321112124443000110245555788615305689999988899862777234888
Q ss_pred HHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCC-CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHH
Q ss_conf 789999999876530----------477823489999997278-986999721443233224320675897268999888
Q gi|254780130|r 75 YHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEG-KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEE 143 (205)
Q Consensus 75 ~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~-~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~ 143 (205)
++|+..++.+...+. |+.....|...++.|+++ ...||+++.+|||.||||| +|+++|+||++|||..
T Consensus 718 sq~t~~l~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~vflls~kagg~glnLt-~a~~vi~~d~~wNp~~ 796 (866)
T COG0553 718 SQFTPVLDLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLT-GADTVILFDPWWNPAV 796 (866)
T ss_pred ECCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEHHCCCCCCCCC-CCCEEEECCCCCCHHH
T ss_conf 666059999999998558757987378752128899999864667757997530057661214-5652466077636679
Q ss_pred HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 022555576665420265775399999838895899999999999999999999
Q gi|254780130|r 144 HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205)
Q Consensus 144 ~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205)
..||++|. ||+||+++|.||+++++||+||+|++.+..|..+.+.+++.
T Consensus 797 e~Qa~dRa-----~RigQ~~~v~v~r~i~~~tiEe~i~~~~~~K~~l~~~~~~~ 845 (866)
T COG0553 797 ELQAIDRA-----HRIGQKRPVKVYRLITRGTIEEKILELQEKKQELLDSLIDA 845 (866)
T ss_pred HHHHHHHH-----HHCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99999878-----76078015999984113739999999998899899998601
No 8
>KOG1002 consensus
Probab=99.98 E-value=1.4e-31 Score=194.23 Aligned_cols=142 Identities=22% Similarity=0.300 Sum_probs=120.3
Q ss_pred HHHHHHHHHHH----HHCCCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHH-HCCCCCEEEECHH
Q ss_conf 23433499998----614899711057899999998765304----------77823489999997-2789869997214
Q gi|254780130|r 53 DEKIKALEVII----EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEW-NEGKIPLLFAHPA 117 (205)
Q Consensus 53 ~~Kl~~l~~ii----~~~~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~r~~~i~~f-~~~~~~Vll~~~~ 117 (205)
|.|+++|.+-+ +....-|.|||+||++.++.|..++++ +.+...|...+..| ++.+++|||.|.+
T Consensus 619 STKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLk 698 (791)
T KOG1002 619 STKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGKAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLK 698 (791)
T ss_pred HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEEEC
T ss_conf 15799999999999971552542049877889999998861267338996367786778999997412888179999860
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 43233224320675897268999888022555576665420265775399999838895899999999999999999999
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205)
|||+.||||. |++++++||||||+..+||.||| |||||.+||.|.+|+.++|||++|.+.+++|..+....++.
T Consensus 699 AGGVALNLte-ASqVFmmDPWWNpaVe~Qa~DRi-----HRIGQ~rPvkvvrf~iEnsiE~kIieLQeKKa~mihaTi~q 772 (791)
T KOG1002 699 AGGVALNLTE-ASQVFMMDPWWNPAVEWQAQDRI-----HRIGQYRPVKVVRFCIENSIEEKIIELQEKKANMIHATIGQ 772 (791)
T ss_pred CCCEEEEECH-HCEEEEECCCCCHHHHHHHHHHH-----HHHCCCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 5846863100-00257626643677775544467-----76047565268886301228999999998886562433177
Q ss_pred HHH
Q ss_conf 986
Q gi|254780130|r 198 LKK 200 (205)
Q Consensus 198 ~~~ 200 (205)
-+.
T Consensus 773 de~ 775 (791)
T KOG1002 773 DEE 775 (791)
T ss_pred CHH
T ss_conf 689
No 9
>KOG4439 consensus
Probab=99.98 E-value=1.9e-31 Score=193.50 Aligned_cols=139 Identities=24% Similarity=0.392 Sum_probs=122.2
Q ss_pred CHHHHHHHHHHHHHC---CCCCEEEHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHH--CCCCCEEEECH
Q ss_conf 723433499998614---8997110578999999987653047----------78234899999972--78986999721
Q gi|254780130|r 52 HDEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWN--EGKIPLLFAHP 116 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~---~~~kviVf~~f~~~l~~l~~~~~~~----------~~~~~r~~~i~~f~--~~~~~Vll~~~ 116 (205)
.+.|+....++++.. ..+|++|-++|...++.++.++..+ ..+..|+.+++.|| .+..+|+|++.
T Consensus 727 ~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSL 806 (901)
T KOG4439 727 PSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSL 806 (901)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 30578889999998861366505642677888878888875077136620574040678999999886048805999997
Q ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44323322432067589726899988802255557666542026577539999983889589999999999999999999
Q gi|254780130|r 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196 (205)
Q Consensus 117 ~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~ 196 (205)
.|||+||||+ ++||+|.+|+.|||+...||-+|| ||+||+++|+||+|+++||+|++|...+..|.+++..|+.
T Consensus 807 tAGGVGLNL~-GaNHlilvDlHWNPaLEqQAcDRI-----YR~GQkK~V~IhR~~~~gTvEqrV~~LQdkKldlA~~VL~ 880 (901)
T KOG4439 807 TAGGVGLNLI-GANHLILVDLHWNPALEQQACDRI-----YRMGQKKDVFIHRLMCKGTVEQRVKSLQDKKLDLAKGVLT 880 (901)
T ss_pred CCCCCEEEEC-CCCEEEEEECCCCHHHHHHHHHHH-----HHHCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 0674135203-563389985466878889998999-----9842667258999874372899999888888887766425
No 10
>KOG0391 consensus
Probab=99.97 E-value=4.5e-31 Score=191.45 Aligned_cols=145 Identities=20% Similarity=0.412 Sum_probs=125.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHC-CCCCE
Q ss_conf 565420572343349999861--4899711057899999998765----------3047782348999999727-89869
Q gi|254780130|r 45 EKHWKEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNE-GKIPL 111 (205)
Q Consensus 45 ~~~~~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~-~~~~V 111 (205)
+.....+...|+..|--++.. .+|.+|+||+|....++.|+.- +.+...+..|+...++||. ..+-+
T Consensus 1251 elrLiQyDcGKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLEqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfc 1330 (1958)
T KOG0391 1251 ELRLIQYDCGKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFC 1330 (1958)
T ss_pred CHHEEECCCCHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
T ss_conf 10100004205999999999998558548851688999999999985425689984487538899999997367871699
Q ss_pred EEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 99721443233224320675897268999888022555576665420265775399999838895899999999999999
Q gi|254780130|r 112 LFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191 (205)
Q Consensus 112 ll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~ 191 (205)
||+|+.+||+|+||| +|++|||||.+|||....||.||| |||||+++|.||+|+++.||||.|++....|+.+.
T Consensus 1331 fILSTrSggvGiNLt-gADTVvFYDsDwNPtMDaQaQDrC-----hRIGqtRdVhIYRliSerTIEenILKkanqKr~L~ 1404 (1958)
T KOG0391 1331 FILSTRSGGVGINLT-GADTVVFYDSDWNPTMDAQAQDRC-----HRIGQTRDVHIYRLISERTIEENILKKANQKRMLD 1404 (1958)
T ss_pred EEEECCCCCCCCCCC-CCCEEEEECCCCCCHHHHHHHHHH-----HHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
T ss_conf 998526786420134-674589845888801326889888-----87457341378874033407899986322777666
Q ss_pred HHHH
Q ss_conf 9999
Q gi|254780130|r 192 DLLL 195 (205)
Q Consensus 192 ~~~l 195 (205)
+..+
T Consensus 1405 evai 1408 (1958)
T KOG0391 1405 EVAI 1408 (1958)
T ss_pred HHHH
T ss_conf 6642
No 11
>KOG0388 consensus
Probab=99.97 E-value=3.6e-30 Score=186.47 Aligned_cols=140 Identities=21% Similarity=0.462 Sum_probs=125.5
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 72343349999861--489971105789999999876----------530477823489999997278986999721443
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~----------~~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~ 119 (205)
.+.|+..|-+++-. +.|.+|++|.|.+..++.++. ++.|+....-|.+.+++||.+++=|||+++.||
T Consensus 1026 dSgKL~~LDeLL~kLkaegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAG 1105 (1185)
T KOG0388 1026 DSGKLVVLDELLPKLKAEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAG 1105 (1185)
T ss_pred CCCCEEEHHHHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHCCCCCEEEEEEECCCC
T ss_conf 66543639989898641782588215798999999999876046069855754046788888633577558999740467
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 233224320675897268999888022555576665420265775399999838895899999999999999999999
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205)
|.||||| ||++|||||.+|||....||.|| |||.||+++|+||+|+++|||||+|+++..+|-.++..||..
T Consensus 1106 GLGINLT-AADTViFYdSDWNPT~D~QAMDR-----AHRLGQTrdvtvyrl~~rgTvEEk~l~rA~qK~~vQq~Vm~G 1177 (1185)
T KOG0388 1106 GLGINLT-AADTVIFYDSDWNPTADQQAMDR-----AHRLGQTRDVTVYRLITRGTVEEKVLERANQKDEVQQMVMHG 1177 (1185)
T ss_pred CCCCCCC-CCCEEEEECCCCCCCHHHHHHHH-----HHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6620111-24248994488996321677888-----875067543045652001317999998753478899997707
No 12
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.96 E-value=2.5e-28 Score=176.24 Aligned_cols=144 Identities=16% Similarity=0.237 Sum_probs=118.5
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCC--CCCEEEECHHH
Q ss_conf 7234334999986148997110578999999987653-----------0477823489999997278--98699972144
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEG--KIPLLFAHPAS 118 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~--~~~Vll~~~~a 118 (205)
.++|+++|.+++.+..++|++|||.|..+.+.|...+ .++.+..+|..+...|.++ ..+||||| .+
T Consensus 477 ~D~rv~~Li~~Lk~~~~eKvLVFte~~~Ta~~L~~~Lr~~~Gi~~avfh~gms~~ERdraaa~Fa~~e~gaqVLI~T-Ea 555 (955)
T PRK04914 477 FDPRVEWLIDFLKSHRSEKVLVICAKAETALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS-EI 555 (955)
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCEEEEEE-CC
T ss_conf 38899999999985779858999683899999999998755995699709999899999999861767785199972-52
Q ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHH-----
Q ss_conf 323322432067589726899988802255557666542026577539999983889589999999999999999-----
Q gi|254780130|r 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDL----- 193 (205)
Q Consensus 119 ~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~----- 193 (205)
||+|+|||. |+++|+||+||||...+|+|||| |||||+++|.||....+||..+..++--..-.+..+.
T Consensus 556 gsEG~NLQF-~~~LVnyDLPWNP~rLEQRIGRl-----DRiGQ~~dV~Ihvpy~~~s~q~~l~~wy~~gl~af~~~~~~g 629 (955)
T PRK04914 556 GSEGRNFQF-ASHLVLFDLPFNPDLLEQRIGRL-----DRIGQKHDIQIHVPYLEGTAQERLFRWYHEGLNAFEHTCPTG 629 (955)
T ss_pred CCCCCCHHH-HHHHEECCCCCCHHHHHHHHHHH-----HHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 124503777-43523525898765889985206-----542786750798620289889999999998888975569118
Q ss_pred --HHHHHHHHH
Q ss_conf --999998653
Q gi|254780130|r 194 --LLNALKKET 202 (205)
Q Consensus 194 --~l~~~~~e~ 202 (205)
+.+.+..++
T Consensus 630 ~~v~~~~~~~l 640 (955)
T PRK04914 630 RALYDEFGDEL 640 (955)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 13
>KOG1015 consensus
Probab=99.96 E-value=2.6e-29 Score=181.67 Aligned_cols=146 Identities=21% Similarity=0.293 Sum_probs=126.2
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHH--------------------------------HHCCCCHH
Q ss_conf 05723433499998614--899711057899999998765--------------------------------30477823
Q gi|254780130|r 50 EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKA--------------------------------FPQGRTLD 95 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~--------------------------------~~~~~~~~ 95 (205)
.-+++|+-.|.+|+... -|.|++||+|-...|+.|+.. +.|+.+..
T Consensus 1122 ~~~SgKmiLLleIL~mceeIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~ 1201 (1567)
T KOG1015 1122 LEHSGKMILLLEILRMCEEIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQ 1201 (1567)
T ss_pred HHCCCCEEHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEECCCCEEEECCCCCHH
T ss_conf 40376224599999999973653687623332258999999860246865444642225555220477437754855378
Q ss_pred HHHHHHHHHHCCC---CCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 4899999972789---8699972144323322432067589726899988802255557666542026577539999983
Q gi|254780130|r 96 KDPCTIQEWNEGK---IPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172 (205)
Q Consensus 96 ~r~~~i~~f~~~~---~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~ 172 (205)
+|+...+.||++. .+.||++++||+.|||| .|||+||.||-+|||....|++=|+ ||+||++||++|+|++
T Consensus 1202 ~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNL-vAANRVIIfDasWNPSyDtQSIFRv-----yRfGQtKPvyiYRfiA 1275 (1567)
T KOG1015 1202 SRKKWAEEFNDPTNLRARLFLISTRAGSLGINL-VAANRVIIFDASWNPSYDTQSIFRV-----YRFGQTKPVYIYRFIA 1275 (1567)
T ss_pred HHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCE-EECCEEEEEECCCCCCCCHHHHHHH-----HHHCCCCCEEEHHHHH
T ss_conf 899999984683350137999962267652002-3314289994555875206889999-----8605767314014454
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88958999999999999999999999865
Q gi|254780130|r 173 QNTIDELVLQRLRTKSTIQDLLLNALKKE 201 (205)
Q Consensus 173 ~~tiEe~i~~~l~~K~~~~~~~l~~~~~e 201 (205)
.||+|++||+++-.|..++--|+|...-+
T Consensus 1276 qGTmEeKIYkRQVTKqsls~RVVDeqQv~ 1304 (1567)
T KOG1015 1276 QGTMEEKIYKRQVTKQSLSFRVVDEQQVE 1304 (1567)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 14088899998876755435430299898
No 14
>KOG0386 consensus
Probab=99.95 E-value=5.8e-28 Score=174.25 Aligned_cols=189 Identities=17% Similarity=0.238 Sum_probs=142.8
Q ss_pred HHHHHHHHHHHHHCC--CCEEHHHHHHHHHHHHHHCCCCHHCCCC-CCCCC--------CCHHHHHHHHHHHHHC--CCC
Q ss_conf 589999999997357--8320999999999998860770003445-65420--------5723433499998614--899
Q gi|254780130|r 3 QYHKFQRELYCDLQG--ENIEAFNSASKTVKCLQLANGAVYYDEE-KHWKE--------VHDEKIKALEVIIEKA--NAA 69 (205)
Q Consensus 3 ~Y~~l~~~~~~~~~~--~~i~a~~~~~~~~kL~Ql~~g~~~~d~~-~~~~~--------~~~~Kl~~l~~ii~~~--~~~ 69 (205)
.|+.|.+....-.++ +.-..-...-.++-|+.+||||..+.+- ..+.. --+.|++.|..++-.. .|.
T Consensus 648 lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLkatgH 727 (1157)
T KOG0386 648 LYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLKATGH 727 (1157)
T ss_pred HHHHHHHCCCCCCCCHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCC
T ss_conf 31888847988767210034641154576999985477215444303422002705787731479999766088773276
Q ss_pred CEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCC--EEEECHHHHHHHHHHHHHCCEEEEECC
Q ss_conf 711057899999998765----------30477823489999997278986--999721443233224320675897268
Q gi|254780130|r 70 PIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIP--LLFAHPASCGHGLNLQYGGNILVFFSL 137 (205)
Q Consensus 70 kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~--Vll~~~~a~g~GlnL~~a~~~vI~~~~ 137 (205)
+|+.|++.+..++.++.. +.+....+.|....+.||.++.+ +|++++.|||.|+|||. ++++|.||.
T Consensus 728 RVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQt-adtviifds 806 (1157)
T KOG0386 728 RVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQT-ADTVIIFDS 806 (1157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCHHH-CCEEEEECC
T ss_conf 0115777888899999998662421244158766146899999715999862564332102555403211-352788658
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999888022555576665420265775399999838895899999999999999999999
Q gi|254780130|r 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLNA 197 (205)
Q Consensus 138 ~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~~ 197 (205)
.|||..+.||.+| ||||||+++|.|+++++.+++||.|+.....|+++.+.+...
T Consensus 807 dwnp~~d~qaqdr-----ahrigq~~evRv~rl~tv~sveE~il~~a~~Kl~~d~kviqa 861 (1157)
T KOG0386 807 DWNPHQDLQAQDR-----AHRIGQKKEVRVLRLITVNSVEEKILAEAFYKLDVDGKVIQA 861 (1157)
T ss_pred CCCCHHHHHHHHH-----HHHHHCHHHEEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHC
T ss_conf 8883167999999-----997502123011231004079999999999750741766430
No 15
>KOG1000 consensus
Probab=99.94 E-value=2.4e-27 Score=170.78 Aligned_cols=136 Identities=23% Similarity=0.307 Sum_probs=117.6
Q ss_pred HHHHHHHHHHHHH------CCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHH-CCCCCEEEEC
Q ss_conf 2343349999861------48997110578999999987653----------04778234899999972-7898699972
Q gi|254780130|r 53 DEKIKALEVIIEK------ANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAH 115 (205)
Q Consensus 53 ~~Kl~~l~~ii~~------~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~-~~~~~Vll~~ 115 (205)
-.|+.+..+.+.+ .++.|++||+|++..++.|+..+ .|.....+|...+..|| +.+++|.+++
T Consensus 471 iaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvls 550 (689)
T KOG1000 471 IAKAAAVCEYILENYFLPDAPPRKFLVFAHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLS 550 (689)
T ss_pred CCCCHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEE
T ss_conf 10208899999747444568873599994148799999999987479758856989843478999873146314799999
Q ss_pred HHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 1443233224320675897268999888022555576665420265775399999838895899999999999999999
Q gi|254780130|r 116 PASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLL 194 (205)
Q Consensus 116 ~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~ 194 (205)
+.|||+||+|+ |++.++|.+++|||....||+||+ ||+||+..|+||||+++||+|+.++..+.+|.+....+
T Consensus 551 ItA~gvGLt~t-Aa~~VVFaEL~wnPgvLlQAEDRa-----HRiGQkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~s~ 623 (689)
T KOG1000 551 ITAAGVGLTLT-AASVVVFAELHWNPGVLLQAEDRA-----HRIGQKSSVFVQYLVAKGTADDYMWPMLQQKLDVLGSV 623 (689)
T ss_pred EEECCCCEEEE-CCCEEEEEEECCCCCEEEECHHHH-----HHCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHHHC
T ss_conf 86314441465-132589998237875477514656-----64056651138999954845777789999998788662
No 16
>KOG1001 consensus
Probab=99.93 E-value=3.9e-27 Score=169.64 Aligned_cols=138 Identities=18% Similarity=0.281 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHC--CC-CCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHH-CCCCCEEEECHHH
Q ss_conf 23433499998614--89-97110578999999987653----------04778234899999972-7898699972144
Q gi|254780130|r 53 DEKIKALEVIIEKA--NA-APIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWN-EGKIPLLFAHPAS 118 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~--~~-~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a 118 (205)
+.|+.++..++... .. .+++||++|...++.+...+ .+..+...|...+..|+ ++...|++++.+|
T Consensus 521 s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~dg~~~~~~r~~s~~~f~~~~~~~vll~SlKa 600 (674)
T KOG1001 521 SSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
T ss_conf 56669999998653578898625533689988885223443144401011256788998765315667635699999885
Q ss_pred HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 323322432067589726899988802255557666542026577539999983889589999999999999999999
Q gi|254780130|r 119 CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196 (205)
Q Consensus 119 ~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~ 196 (205)
||+|||||. |++++.+||+|||..++||++|+ ||+||+++|+|++++.++|+|++|++.+.+|+.+....++
T Consensus 601 g~~glNlt~-A~~v~~~dpwwnp~~eeQaidR~-----hrigq~k~V~V~r~~ikdtvEer~l~iq~kK~~~~~~a~~ 672 (674)
T KOG1001 601 GKVGLNLTA-ASHVLLMDPWWNPAVEEQAIDRA-----HRIGQTKPVKVSRFIIKDTVEERILKIQEKKREYNASAFG 672 (674)
T ss_pred HCCCCCHHH-HHHHHHCCHHCCCHHHHHHHHHH-----HHHCCCEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 001202246-67888602221828899987789-----8856730589999751334699999988888877886416
No 17
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.85 E-value=1.6e-21 Score=138.68 Aligned_cols=112 Identities=21% Similarity=0.359 Sum_probs=96.3
Q ss_pred CCCHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHH
Q ss_conf 05723433499998614--89971105789999999876530----------4778234899999972789869997214
Q gi|254780130|r 50 EVHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPA 117 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~ 117 (205)
..+++|++.+.+++++. +|+++|||+++...++.|.+.|. ++.....|..+++.|++++..+++++ .
T Consensus 8 ~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~R~~~~~~F~~~~~~ilv~t-~ 86 (131)
T cd00079 8 PVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGEIVVLVAT-D 86 (131)
T ss_pred ECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHCEEEEEEE-E
T ss_conf 386699999999999999789909999788999999999995589989999899999999999999775401048875-1
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 432332243206758972689998880225555766654202657753999
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
++|+|+||+ +++++|++++||||..+.|+.||+ +|.||+..|.++
T Consensus 87 ~~~~Gldl~-~~~~vI~~~~~~s~~~~~Q~~GR~-----~R~gq~~~~~~~ 131 (131)
T cd00079 87 VIARGIDLP-NVSVVINYDLPWSPSSYLQRIGRA-----GRAGQKGTAILL 131 (131)
T ss_pred CCEECCCCC-CCCEEEEECCCCCHHHHHHHHHCC-----CCCCCCEEEEEC
T ss_conf 120036610-287999978996989999897216-----708996379979
No 18
>KOG1016 consensus
Probab=99.85 E-value=5.8e-22 Score=141.04 Aligned_cols=127 Identities=17% Similarity=0.337 Sum_probs=109.4
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHC----------------------------CCCHHHHHHHHHHHHCC-CCC-EEEECH
Q ss_conf 899711057899999998765304----------------------------77823489999997278-986-999721
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQ----------------------------GRTLDKDPCTIQEWNEG-KIP-LLFAHP 116 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~----------------------------~~~~~~r~~~i~~f~~~-~~~-Vll~~~ 116 (205)
-|.+++||++-...++.|+..+++ ......|++.+..||++ .+. .|++++
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllst 797 (1387)
T KOG1016 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLST 797 (1387)
T ss_pred CCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCCCEECCCCCCCCCHHHHHHHHCCCCCCCEEEEEEHH
T ss_conf 47458884020148899999974331668999888841544430233304687665249999985168878524433310
Q ss_pred HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 44323322432067589726899988802255557666542026577539999983889589999999999999999999
Q gi|254780130|r 117 ASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQDLLLN 196 (205)
Q Consensus 117 ~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~~~~l~ 196 (205)
+||..|+||- .+|.+|.|+..|||.+..||.+|+ +|+||+++|+||+|++.+|.|.+||+++..|..++|.++|
T Consensus 798 rag~lGinLI-sanr~~ifda~wnpchdaqavcRv-----yrYGQ~KpcfvYRlVmD~~lEkkIydRQIsKqGmsdRvVD 871 (1387)
T KOG1016 798 RAGSLGINLI-SANRCIIFDACWNPCHDAQAVCRV-----YRYGQQKPCFVYRLVMDNSLEKKIYDRQISKQGMSDRVVD 871 (1387)
T ss_pred CCCCCCCEEE-CCCEEEEEEEECCCCCCCHHHHHH-----HHHCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCHHHHHC
T ss_conf 2564320232-166079997305740132012556-----6415747616875302225678788888766243033110
Q ss_pred HHH
Q ss_conf 998
Q gi|254780130|r 197 ALK 199 (205)
Q Consensus 197 ~~~ 199 (205)
..+
T Consensus 872 d~n 874 (1387)
T KOG1016 872 DAN 874 (1387)
T ss_pred CCC
T ss_conf 138
No 19
>PRK13766 Hef nuclease; Provisional
Probab=99.75 E-value=4.5e-17 Score=114.00 Aligned_cols=139 Identities=19% Similarity=0.270 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHHHH----CCCCCEEEHHHHHHHHHHHHHHHHC------------------CCCHHHHHHHHHHHHCCCC
Q ss_conf 72343349999861----4899711057899999998765304------------------7782348999999727898
Q gi|254780130|r 52 HDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ------------------GRTLDKDPCTIQEWNEGKI 109 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~----~~~~kviVf~~f~~~l~~l~~~~~~------------------~~~~~~r~~~i~~f~~~~~ 109 (205)
.++|++.|.+++.+ .++.++|||++|+.+...|...+.. |.+..++..+++.|++|.+
T Consensus 344 ~hPKl~kL~eiL~~~~~~~~~sRvIIFv~~R~Ta~~L~~~L~~~~ik~~~fVGq~s~~~~kGmsqkeQ~evL~~FR~Ge~ 423 (764)
T PRK13766 344 EHPKLEKLLEIVKEQLGKKPDSRIIVFTQYRDTAEKIVDLLNKNGIKAIRFVGQASRDGDKGMSQKEQIETLDRFRAGEY 423 (764)
T ss_pred CCCHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 89379999999999972699980899927679999999998658997228983689878889898999999999857998
Q ss_pred CEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 69997214432332243206758972689998880225555766654202657753999998388958999999999999
Q gi|254780130|r 110 PLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205)
Q Consensus 110 ~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205)
+||+++ ..|-+||+.. +||.|||||+.-|+....|+.| |.|.+++-.|+-|+++||.||.-|..-.+|..
T Consensus 424 NvLVAT-SV~EEGLDIP-~cdLVI~Yd~v~S~IR~IQR~G--------RTGR~r~G~v~vLi~~gt~de~~~~~~~~kek 493 (764)
T PRK13766 424 NVLVAT-SVAEEGLDIP-SVDLVIFYEPVPSEIRSIQRKG--------RTGRQRGGRVVVLIAKGTRDEAYYWSSRRKEK 493 (764)
T ss_pred CEEEEC-CHHHCCCCCC-CCCEEEEECCCCCHHHHHHHCC--------CCCCCCCCEEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 889876-7664488887-7888999379961999999746--------65677897499999568626778885112068
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999986
Q gi|254780130|r 190 IQDLLLNALKK 200 (205)
Q Consensus 190 ~~~~~l~~~~~ 200 (205)
-+-..+..++.
T Consensus 494 ~m~~~l~~~~~ 504 (764)
T PRK13766 494 KMKEILKNMQE 504 (764)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 20
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.73 E-value=1.9e-16 Score=110.49 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=113.4
Q ss_pred CCCHHHHHHHHHHHHH----CCCCCEEEHHHHHHHHHHHHHHHHC-------------------CCCHHHHHHHHHHHHC
Q ss_conf 0572343349999861----4899711057899999998765304-------------------7782348999999727
Q gi|254780130|r 50 EVHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ-------------------GRTLDKDPCTIQEWNE 106 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~----~~~~kviVf~~f~~~l~~l~~~~~~-------------------~~~~~~r~~~i~~f~~ 106 (205)
++.++|++.+++++.+ .++.++|||++|+++.+.|...+.. |.+-.++..+++.|+.
T Consensus 344 ~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~ 423 (542)
T COG1111 344 GVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRK 423 (542)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHC
T ss_conf 68896189999999999723898559999614758999999998528752068861145455666588899999999865
Q ss_pred CCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 89869997214432332243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 107 ~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
|.+.||+++ ..|-+||+... ++-+|||+|.-|+.+..|+.|| .|.+++-.||-|+++||-|+.-|..-.+
T Consensus 424 Ge~nVLVaT-SVgEEGLDIp~-vDlVifYEpvpSeIR~IQR~GR--------TGR~r~Grv~vLvt~gtrdeayy~~s~r 493 (542)
T COG1111 424 GEYNVLVAT-SVGEEGLDIPE-VDLVIFYEPVPSEIRSIQRKGR--------TGRKRKGRVVVLVTEGTRDEAYYYSSRR 493 (542)
T ss_pred CCCEEEEEC-CCCCCCCCCCC-CCEEEEECCCCHHHHHHHHHCC--------CCCCCCCEEEEEEECCCHHHHHHHHHHH
T ss_conf 785189981-23224678876-5679995688578899986074--------4557797499999658627899999999
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 99999999999986
Q gi|254780130|r 187 KSTIQDLLLNALKK 200 (205)
Q Consensus 187 K~~~~~~~l~~~~~ 200 (205)
|...+...+..++.
T Consensus 494 ke~~m~e~i~~~~~ 507 (542)
T COG1111 494 KEQKMIESIRGLSL 507 (542)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999998887
No 21
>KOG0298 consensus
Probab=99.72 E-value=7e-18 Score=118.46 Aligned_cols=137 Identities=21% Similarity=0.245 Sum_probs=105.5
Q ss_pred CCCCCCCHHHHHHHHHHH---H-HCCCCCEEEHHHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHCCCCCEEEE
Q ss_conf 654205723433499998---6-1489971105789999999876530477823-------4899999972789869997
Q gi|254780130|r 46 KHWKEVHDEKIKALEVII---E-KANAAPIIVAYHFNSDLARLQKAFPQGRTLD-------KDPCTIQEWNEGKIPLLFA 114 (205)
Q Consensus 46 ~~~~~~~~~Kl~~l~~ii---~-~~~~~kviVf~~f~~~l~~l~~~~~~~~~~~-------~r~~~i~~f~~~~~~Vll~ 114 (205)
+.+++-.+.|++..-..+ + +.+-.+||||+++...++.+.++|.-....- .-...+..|.+ +.+|++
T Consensus 1195 k~ik~sfgtKId~v~~~il~ik~kn~q~kvIvfSqw~~vLdV~~~~~~~N~I~~~~~~~t~~~~d~i~~fk~--i~cLll 1272 (1394)
T KOG0298 1195 KSIKGDFGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETEDFDDCIICFKS--IDCLLL 1272 (1394)
T ss_pred HHHHHHHCCCCCHHHHHHHHHHCCCCCCEEEEEEEHHHHHHHHHHHHHHCCHHHHHCCCCCCHHHHHHHCCC--CEEEEE
T ss_conf 765531056763889999986325877527999626889999999998433110021677654356452256--539999
Q ss_pred CHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 2144323322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r 115 HPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 115 ~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
....+|-|+||..| .+++..+|-.||.+..||+||+ |||||+++++||+++.++|+||.|+.....|.+.
T Consensus 1273 ~v~~~~~GLNL~eA-~Hvfl~ePiLN~~~E~QAigRv-----hRiGQ~~pT~V~~fiv~~TvEe~Il~l~~~~ee~ 1342 (1394)
T KOG0298 1273 FVSKGSKGLNLIEA-THVFLVEPILNPGDEAQAIGRV-----HRIGQKRPTFVHRFIVNETVEENILSLITSKEET 1342 (1394)
T ss_pred EECCCCCCCCHHHH-HHHHEECCCCCCHHHHHHHHHH-----HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 70367552327753-3643025566830777532214-----3216655125644664152377799876505777
No 22
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.43 E-value=2.3e-12 Score=87.93 Aligned_cols=124 Identities=17% Similarity=0.234 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|+..|..++......++|||++-....+.+...|. +..+..+|..+++.|.+++++||+++ ..++-|
T Consensus 232 ~~k~~~L~~ll~~~~~~k~iIF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~vLVaT-DvaaRG 310 (417)
T PRK11192 232 EHKTALLCHLLKQEEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQKKRNEAIKRLTDGRVNVLVAT-DVAARG 310 (417)
T ss_pred HHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCC
T ss_conf 9999999999853476652153112466768988653148835754001799999999999976999899981-243467
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
|++. ..++||+||+|-+++.|.+++||- -|.|++-.+ +.|++. -|...+..+++-
T Consensus 311 iDi~-~V~~VInyd~P~~~~~YvHRiGRT-----GR~G~~G~a--it~v~~--~d~~~~~~ie~~ 365 (417)
T PRK11192 311 IDID-DISHVINFDMPRSADTYLHRIGRT-----GRAGKKGTA--ISLVEA--HDHLLLGKIERY 365 (417)
T ss_pred CCCC-CCCEEEEECCCCCHHHHHHHCCHH-----HCCCCCEEE--EEEECH--HHHHHHHHHHHH
T ss_conf 7704-698899979999888923306772-----348995489--998748--999999999999
No 23
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.42 E-value=2.9e-12 Score=87.37 Aligned_cols=125 Identities=21% Similarity=0.311 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|...|.+++......++|||++-....+.+.+.|. +.....+|...++.|++++++||+++ ..++-|
T Consensus 317 ~dk~~~L~~ll~~~~~~k~IIF~nt~~~~~~l~~~L~~~g~~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRG 395 (472)
T PRK01297 317 SDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREGKIRVLVAT-DVAGRG 395 (472)
T ss_pred HHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHHCC
T ss_conf 8999999999984798736896174999999998765449616864377899999999999976999699886-613366
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
|++. ..++||.||.|-+++.|.+++||-+ |.|++-.+ +.|++++ |...+..++...
T Consensus 396 LDi~-~V~~VInyD~P~~~~~YIHRiGRTG-----RaG~~G~a--isfv~~~--d~~~~~~ie~~l 451 (472)
T PRK01297 396 IHID-GISHVINFTLPEDPDDYVHRIGRTG-----RAGASGVS--ISFAGED--DAFQLPEIEELL 451 (472)
T ss_pred CCCC-CCCEEEEECCCCCHHHHHHCCCHHH-----CCCCCEEE--EEEECHH--HHHHHHHHHHHH
T ss_conf 7757-8888999689897676010265312-----68996379--9986388--999999999998
No 24
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.38 E-value=5.8e-12 Score=85.73 Aligned_cols=124 Identities=18% Similarity=0.240 Sum_probs=100.1
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|++.|..++...+..++||||+.+...+.+.+.|. ++.....|..++..|++++.+||+++ ..++-
T Consensus 226 ~~~K~~~L~~ll~~~~~~~~IIFcntk~~v~~l~~~L~~~g~~~~~lHg~m~q~~R~~~l~~F~~g~~~iLVaT-DvaaR 304 (459)
T PRK11776 226 PDERLPALQRLLLHYRPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANRSCSVLVAT-DVAAR 304 (459)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf 18789999999973687660376174899999999998679968998799999999999999977999799881-04347
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
||+... -++||+||+|-+++.|.+++||-+ |.|.+-.+ +.|++.. |...++.+.+
T Consensus 305 GIDi~~-V~~VInyDlP~~~e~YvHRiGRTG-----RaG~~G~a--it~vt~~--e~~~l~~ie~ 359 (459)
T PRK11776 305 GLDIKS-LEAVINYELARDPEVHVHRIGRTG-----RAGSKGLA--LSLVAPE--EMQRAAAIED 359 (459)
T ss_pred CCCCCC-CCEEEEECCCCCHHHHHHCCCHHH-----CCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf 677135-988999789897455202052513-----78996579--9998689--9999999999
No 25
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.37 E-value=6.5e-12 Score=85.44 Aligned_cols=124 Identities=18% Similarity=0.243 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|.+.|..++...+..++|||++-+...+.|.+.|. +..+...|..+++.|++++++||+++ ..++-|
T Consensus 230 ~~k~~~L~~ll~~~~~~~~iIF~~tk~~a~~l~~~L~~~g~~~~~lHg~~sq~~R~~~l~~F~~g~~~vLVaT-DvaaRG 308 (457)
T PRK10590 230 KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLVAT-DIAARG 308 (457)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCC
T ss_conf 7899999999861586633588411999999999985569982323247899999999999986998299957-701155
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
|++. ..++||+||+|.++++|...+||-+ |.|.+-. .+.|++.+ |...++.+++-
T Consensus 309 iDi~-~V~~VInyD~P~~~e~YvHRiGRTG-----RaG~~G~--ait~v~~~--e~~~~~~ie~~ 363 (457)
T PRK10590 309 LDIE-ELPHVVNYELPNVPEDYVHRIGRTG-----RAAATGE--ALSLVCVD--EHKLLRDIEKL 363 (457)
T ss_pred CCCC-CCCEEEEECCCCCHHHEECCCCCCC-----CCCCCEE--EEEEECHH--HHHHHHHHHHH
T ss_conf 6635-6887999389997445002267060-----5899536--99986689--99999999999
No 26
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.36 E-value=1.3e-11 Score=83.88 Aligned_cols=114 Identities=17% Similarity=0.285 Sum_probs=96.2
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|...|..++...+..++|||++-....+.+.+.|. +.....+|..+++.|++++++||+++ ..++-
T Consensus 241 ~~~K~~~L~~LL~~~~~~k~IIF~nT~~~ve~l~~~L~~~g~~v~~LHG~lsQ~eR~~~L~~Fk~G~~~VLVaT-DVAAR 319 (574)
T PRK04537 241 DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-DVAAR 319 (574)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCC
T ss_conf 78999999999972677651153341899999999999779968997099999999999999976999799773-50023
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 32243206758972689998880225555766654202657753999998388
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205)
||++. ..++||.||+|.++++|..++||.. |.|.+-.+ +.|++++
T Consensus 320 GIDIp-~V~~VINYDlP~~~e~YVHRIGRTG-----RaGr~G~A--ITfv~~~ 364 (574)
T PRK04537 320 GLHID-GVKYVYNYDLPFDAEDYVHRIGRTA-----RLGEEGDA--ISFACER 364 (574)
T ss_pred CCCCC-CCCEEEEECCCCCHHHHHCCCCHHH-----CCCCCEEE--EEEECHH
T ss_conf 35714-6997999579698214112453503-----78993359--9987779
No 27
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.30 E-value=4.1e-11 Score=81.04 Aligned_cols=115 Identities=17% Similarity=0.243 Sum_probs=94.7
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|+..|..++++....++|||++-....+.+...| .+.....+|..+++.|++++++||+++ ..++-
T Consensus 240 ~~~K~~~L~~ll~~~~~~k~iIF~nt~~~~~~l~~~L~~~g~~~~~lhg~~~q~~R~~~l~~F~~g~~~vLVaT-DvaaR 318 (423)
T PRK04837 240 NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVPQKKRLRILEQFTRGDLDILVAT-DVAAR 318 (423)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEH-HHHHC
T ss_conf 27799999999984088746886162888999999997659817872254579999999999976999899870-04327
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 322432067589726899988802255557666542026577539999983889
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNT 175 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~t 175 (205)
||++. ..++||.||+|-++++|..++||-+ |.|.+-. .+.|++++-
T Consensus 319 GLDi~-~V~~VInyD~P~~~~~YiHRiGRTg-----RaG~~G~--aitf~~~~~ 364 (423)
T PRK04837 319 GLHIP-DVTHVFNYDLPDDCEDYVHRIGRTG-----RAGASGH--SISFACEEY 364 (423)
T ss_pred CCCCC-CCCEEEEECCCCCHHHEECCCCHHH-----CCCCCEE--EEEEECHHH
T ss_conf 77726-7988999699897455100465412-----7899468--999873999
No 28
>KOG0354 consensus
Probab=99.30 E-value=3.3e-10 Score=75.98 Aligned_cols=136 Identities=16% Similarity=0.225 Sum_probs=99.8
Q ss_pred CCHHHHHHHHHHHHH----CCCCCEEEHHHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHH
Q ss_conf 572343349999861----4899711057899999998765304---------------------778234899999972
Q gi|254780130|r 51 VHDEKIKALEVIIEK----ANAAPIIVAYHFNSDLARLQKAFPQ---------------------GRTLDKDPCTIQEWN 105 (205)
Q Consensus 51 ~~~~Kl~~l~~ii~~----~~~~kviVf~~f~~~l~~l~~~~~~---------------------~~~~~~r~~~i~~f~ 105 (205)
..++|+..+.+++.+ .++.++|||+.+++....|.+.+.+ |.+...++..++.|+
T Consensus 392 ~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr 471 (746)
T KOG0354 392 KENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFR 471 (746)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 66846999999999986059885079997328899999999975401354402156035445444457899999999985
Q ss_pred CCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH-HH
Q ss_conf 78986999721443233224320675897268999888022555576665420265775399999838895899999-99
Q gi|254780130|r 106 EGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RL 184 (205)
Q Consensus 106 ~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~-~l 184 (205)
+|.+.||+++ ..|-+||+.. .||.||-|+..-||..+.|+.|| + .+++-.++.+.+ + .+....+ ..
T Consensus 472 ~G~~NvLVAT-SV~EEGLDI~-ec~lVIcYd~~snpIrmIQrrGR-g--------Ra~ns~~vll~t-~-~~~~~~E~~~ 538 (746)
T KOG0354 472 DGEINVLVAT-SVAEEGLDIG-ECNLVICYDYSSNPIRMVQRRGR-G--------RARNSKCVLLTT-G-SEVIEFERNN 538 (746)
T ss_pred CCCCCEEEEE-CCHHCCCCCC-CCCEEEEECCCCCHHHHHHHHCC-C--------CCCCCEEEEEEC-C-HHHHHHHHHH
T ss_conf 7980279981-0100467742-11289996577668899998631-0--------101876999972-5-1688998888
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q gi|254780130|r 185 RTKSTIQDLLLNALK 199 (205)
Q Consensus 185 ~~K~~~~~~~l~~~~ 199 (205)
..|..+++..+...+
T Consensus 539 ~~~e~lm~~~i~~~q 553 (746)
T KOG0354 539 LAKEKLMNQTISKIQ 553 (746)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 769999999998887
No 29
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.24 E-value=7.6e-11 Score=79.56 Aligned_cols=124 Identities=16% Similarity=0.226 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|.++|..+++.....++||||+-+...+.+...| .+..+...|..+++.|.+++++||+++ ..++-
T Consensus 229 ~~~K~~aL~~~L~~~~~~~~IIF~~Tk~~~~~l~~~L~~~g~~~~~LHgdm~q~~R~~~l~~Fr~g~~~ILVaT-DvaAR 307 (629)
T PRK11634 229 GMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDGRLDILIAT-DVAAR 307 (629)
T ss_pred CHHHHHHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCC
T ss_conf 24579999999861588848999822788999999999769965765689999999999999975999889878-62105
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 32243206758972689998880225555766654202657753999998388958999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
||++.. .++||.||+|.+++.|..++||- -|.|.+-.. +.|++. -|...++.+.+
T Consensus 308 GLDi~~-V~~VINyDlP~d~e~YVHRiGRT-----GRaGr~G~A--itfv~~--~e~~~l~~ier 362 (629)
T PRK11634 308 GLDVER-ISLVVNYDIPMDSESYVHRIGRT-----GRAGRAGRA--LLFVEN--RERRLLRNIER 362 (629)
T ss_pred CCCCCC-CCEEEEECCCCCHHHCCCCCCCC-----CCCCCCEEE--EEEECH--HHHHHHHHHHH
T ss_conf 577256-88899968989743401025833-----168996469--998888--99999999999
No 30
>pfam00271 Helicase_C Helicase conserved C-terminal domain. The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.
Probab=99.24 E-value=9.9e-12 Score=84.45 Aligned_cols=66 Identities=24% Similarity=0.445 Sum_probs=58.7
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3047782348999999727898699972144323322432067589726899988802255557666542026
Q gi|254780130|r 88 FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160 (205)
Q Consensus 88 ~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G 160 (205)
+.+..+.++|+.+++.|++++.+|++++ .++++|+|++. ++++|++++|||+..+.|+.||+ +|+|
T Consensus 13 i~g~~~~~~R~~~~~~f~~~~~~ilv~t-~~~~~Gid~~~-~~~vi~~~~~~s~~~~~Q~~GR~-----~R~g 78 (78)
T pfam00271 13 LHGGLSQEEREEILEDFRNGKSKVLVAT-DVAGRGIDLPD-VNVVINYDLPWNPASYIQRIGRA-----GRAG 78 (78)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEE-CCCCCCCCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCC
T ss_conf 8697999999999999987997399992-56525677878-99999978996989999997268-----7799
No 31
>PTZ00110 helicase; Provisional
Probab=99.17 E-value=1.9e-10 Score=77.32 Aligned_cols=116 Identities=20% Similarity=0.363 Sum_probs=95.1
Q ss_pred CHHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 723433499998614-89971105789999999876530----------4778234899999972789869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
...|...|..++.+. .+.++|||++-+...+.|...|. +...-.+|..+++.|.+++++||+++ ..|+
T Consensus 411 ~~eK~~~L~~lL~~~~~~~kvIIFvnTK~~ad~L~~~L~~~G~~a~~LHGd~~Q~eR~~~L~~Fr~G~~~ILVAT-DVAA 489 (602)
T PTZ00110 411 EHEKRAKLKELLGQIMDGGKILIFSETKKGADTLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTGKHPIMIAT-DVAS 489 (602)
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEC-CHHH
T ss_conf 188999999999852789968999297389999999998679957982088999999999999976999889882-2233
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH
Q ss_conf 33224320675897268999888022555576665420265775399999838895
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti 176 (205)
-||++. .-++||.||+|-++++|.-++||-+ |.|.+-. -|.|++.+-.
T Consensus 490 RGLDI~-dV~~VINYD~P~~~edYVHRIGRTG-----RAG~kG~--A~TF~Tpd~~ 537 (602)
T PTZ00110 490 RGLDVR-DVKYVINFDFPNQIEDYVHRIGRTG-----RAGAKGA--SYTFLTPDKY 537 (602)
T ss_pred CCCCCC-CCCEEEEECCCCCCCCCCCCCCCCC-----CCCCCEE--EEEEECCCCH
T ss_conf 155515-7987999589798022101356150-----6899316--9999777707
No 32
>KOG0331 consensus
Probab=99.14 E-value=2.7e-10 Score=76.46 Aligned_cols=126 Identities=17% Similarity=0.319 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHC---CCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 23433499998614---8997110578999999987653----------0477823489999997278986999721443
Q gi|254780130|r 53 DEKIKALEVIIEKA---NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASC 119 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~---~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~ 119 (205)
..|...|..++.+. .+.|+||||+.+...+.|...+ .+..+..+|+..+..|.+|+++||+++ ..|
T Consensus 323 ~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVAT-dVA 401 (519)
T KOG0331 323 TAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREGKSPVLVAT-DVA 401 (519)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEEC-CCC
T ss_conf 8898879999999735689868999643364999998877517661550066648899999975026885469881-531
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC--CHHHHHHHHHHHH
Q ss_conf 2332243206758972689998880225555766654202657753999998388--9589999999999
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN--TIDELVLQRLRTK 187 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~--tiEe~i~~~l~~K 187 (205)
+-||++-. -..||.||+|-|.++|..++||= -|.|++-.. +.|++.. .....+.+.+..+
T Consensus 402 aRGLDi~d-V~lVInydfP~~vEdYVHRiGRT-----GRa~~~G~A--~tfft~~~~~~a~~l~~~l~e~ 463 (519)
T KOG0331 402 ARGLDVPD-VDLVINYDFPNNVEDYVHRIGRT-----GRAGKKGTA--ITFFTSDNAKLARELIKVLREA 463 (519)
T ss_pred CCCCCCCC-CCEEEECCCCCCHHHHHHHCCCC-----CCCCCCCEE--EEEEEHHHHHHHHHHHHHHHHC
T ss_conf 25688766-64799678999989988653765-----457888248--9997278877789999999970
No 33
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.13 E-value=5.4e-11 Score=80.36 Aligned_cols=66 Identities=26% Similarity=0.450 Sum_probs=57.8
Q ss_pred HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 3047782348999999727898699972144323322432067589726899988802255557666542026
Q gi|254780130|r 88 FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG 160 (205)
Q Consensus 88 ~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G 160 (205)
+.+..+..+|..+++.|++++.+|++++ .++++|+||+. ++++|++++|||+..+.|+.||+ +|+|
T Consensus 17 i~g~~~~~~R~~~~~~f~~~~~~ilv~t-~~~~~Gidl~~-~~~vI~~~~~~~~~~~~Q~~GR~-----~R~g 82 (82)
T smart00490 17 LHGGLSQEEREEILEKFNNGKIKVLVAT-DVAERGLDLPG-VDLVIIYDLPWSPASYIQRIGRA-----GRAG 82 (82)
T ss_pred EECCCCHHHHHHHHHHHHCCCCEEEEEE-EEEEEECCCCC-CCEEEEECCCCCHHHHHHHHCCC-----CCCC
T ss_conf 9896999999999999987997199995-02421148988-99999978996989999997258-----7899
No 34
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.10 E-value=9.4e-10 Score=73.51 Aligned_cols=125 Identities=17% Similarity=0.287 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
.|+..|..+++.....++|||++-+...+.|...+ .+..+...|...++.|.+++.+||+++ ..++-||
T Consensus 259 ~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~iLVaT-DvaaRGi 337 (513)
T COG0513 259 EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDGELRVLVAT-DVAARGL 337 (513)
T ss_pred HHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCC
T ss_conf 799999999827888839999576776999999999789659997388998899999999975998989980-6544689
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 24320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
+.. .-++||.||+|.+++.|...+||- -|.|.+-. -+.|++. .-|...+..+.+..
T Consensus 338 Di~-~v~~VinyD~p~~~e~yvHRiGRT-----gRaG~~G~--ai~fv~~-~~e~~~l~~i~~~~ 393 (513)
T COG0513 338 DIP-DVSHVINYDLPLDPEDYVHRIGRT-----GRAGRKGV--AISFVTE-EEEVKKLKRIEKRL 393 (513)
T ss_pred CCC-CCCEEEECCCCCCCCCCCCCCCCC-----CCCCCCCE--EEEEECC-HHHHHHHHHHHHHH
T ss_conf 966-674799787999804131734534-----34899872--7998556-23499999999987
No 35
>KOG0333 consensus
Probab=99.10 E-value=5.6e-10 Score=74.73 Aligned_cols=122 Identities=22% Similarity=0.353 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
.+.|.++|++++++..+.++|||.|.+...+.|.+.| .++...++|+.++..|.++...||+|+ .+||-
T Consensus 501 ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaT-DvAgR 579 (673)
T KOG0333 501 EDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVAT-DVAGR 579 (673)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE-CCCCC
T ss_conf 56889999999984799987999831324899999986443247996178527789999999871578779983-22125
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 322432067589726899988802255557666542026577539999983889589999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l 184 (205)
||+... .++||.|+..=|.++|.-.|||- -|.|+.-.+ ..|++.. |-.+|.-|
T Consensus 580 GIDIpn-VSlVinydmaksieDYtHRIGRT-----gRAGk~Gta--iSflt~~--dt~v~ydL 632 (673)
T KOG0333 580 GIDIPN-VSLVINYDMAKSIEDYTHRIGRT-----GRAGKSGTA--ISFLTPA--DTAVFYDL 632 (673)
T ss_pred CCCCCC-CCEEEECCHHHHHHHHHHHHCCC-----CCCCCCCEE--EEEECCC--HHHHHHHH
T ss_conf 777776-12146220556589998874234-----446667536--8986401--11778999
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.04 E-value=2.1e-09 Score=71.60 Aligned_cols=109 Identities=14% Similarity=0.246 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 34334999986148997110578999999987653----------04778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
.+.+.+.+++....++.-||||.-+...+.+...| ..|...+.|....+.|..++.+|++++ .|-|+||
T Consensus 222 ~~~~~~~~~~~~~~~~sgIIYc~trk~~e~la~~L~~~G~~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT-~AFGMGI 300 (607)
T PRK11057 222 KPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDDLQIVVAT-VAFGMGI 300 (607)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHCCC
T ss_conf 739999999870689977999692899999999998579754530589997899999998756887589975-0110576
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 2432067589726899988802255557666542026577539999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~ 169 (205)
|-.. -..||||++|-|.+.|.|=.|| |-|-|+...|..+|
T Consensus 301 dk~d-VR~ViH~~~P~s~e~yyQE~GR-----AGRDG~~a~c~l~y 340 (607)
T PRK11057 301 NKPN-VRFVVHFDIPRNIESYYQETGR-----AGRDGLPAEAMLFY 340 (607)
T ss_pred CCCC-CCEEEECCCCCCHHHHHHHHHH-----CCCCCCCCEEEEEE
T ss_conf 7777-6679977899999999998863-----52589854189985
No 37
>KOG0330 consensus
Probab=99.01 E-value=2.5e-09 Score=71.16 Aligned_cols=121 Identities=17% Similarity=0.220 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 3433499998614899711057899999998765----------304778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
.|-.+|..++++..|..+||||+-..+.+.+.-. +.|-.+...|-.+.+.|+++...||+++ ..|+-||
T Consensus 286 ~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~T-DVaSRGL 364 (476)
T KOG0330 286 DKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCT-DVASRGL 364 (476)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHCCCCEECCCCHHHHHHHHHHHHHHHCCCCCEEEEC-CHHCCCC
T ss_conf 665238998876359847999834640899999998627643205660357788778998751477679861-3010468
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 24320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205)
+.+. .++||.||.|-+..+|.-+.||.+ |.| +.-..+.|++. .|-..+.+++
T Consensus 365 Dip~-Vd~VVNyDiP~~skDYIHRvGRta-----RaG--rsG~~ItlVtq--yDve~~qrIE 416 (476)
T KOG0330 365 DIPH-VDVVVNYDIPTHSKDYIHRVGRTA-----RAG--RSGKAITLVTQ--YDVELVQRIE 416 (476)
T ss_pred CCCC-CEEEEECCCCCCHHHHHHHCCCCC-----CCC--CCCCEEEEEEH--HHHHHHHHHH
T ss_conf 9877-107995378983788888704300-----167--77514898744--5569999999
No 38
>KOG0328 consensus
Probab=98.84 E-value=2.2e-08 Score=65.93 Aligned_cols=122 Identities=13% Similarity=0.190 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 43349999861489971105789999999876530----------47782348999999727898699972144323322
Q gi|254780130|r 55 KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124 (205)
Q Consensus 55 Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gln 124 (205)
|.+.|.++-+...=...+|||+-+..+++|.+.+. +.....+|+++..+|++++.+||+.+- .-+-|++
T Consensus 253 KfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg~SrvLitTD-VwaRGiD 331 (400)
T KOG0328 253 KFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSGKSRVLITTD-VWARGID 331 (400)
T ss_pred HHHHHHHHHHHHEHHEEEEEECCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEC-HHHCCCC
T ss_conf 376898886430611479996264043688999886173366305776456799999876547834999710-4442587
Q ss_pred HHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 125 L~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
.|- .+.+|.||+|-|.+.|.-++||- -|+|.+.- ...|+..+ |-+++.-+.+-
T Consensus 332 v~q-VslviNYDLP~nre~YIHRIGRS-----GRFGRkGv--ainFVk~~--d~~~lrdieq~ 384 (400)
T KOG0328 332 VQQ-VSLVINYDLPNNRELYIHRIGRS-----GRFGRKGV--AINFVKSD--DLRILRDIEQY 384 (400)
T ss_pred CCE-EEEEEECCCCCCHHHHHHHHCCC-----CCCCCCCE--EEEEECHH--HHHHHHHHHHH
T ss_conf 500-57899437885487876650135-----65677606--99875178--89999999999
No 39
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=98.78 E-value=8.3e-08 Score=62.73 Aligned_cols=127 Identities=16% Similarity=0.185 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHHHCC---------CCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 23433499998614-8997110578999999987653047---------7823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAFPQG---------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~~~~---------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..++..+..++... .+.+++||+........+...|..+ ....+|..+++.|..++.++++.+ +.+.+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR~~il~~fr~g~~~~lv~~-~vl~EG 345 (442)
T COG1061 267 ERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEEREAILERFRTGGIKVLVTV-KVLDEG 345 (442)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEE-EEECCC
T ss_conf 8999999999875326886699975779999999986267742466578998899999999870895299996-141266
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHC-CCCCCC--EEEEEEEECCCHHHHHHHHHHH
Q ss_conf 224320675897268999888022555576665420-265775--3999998388958999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQ-AGFKRA--VFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR-~GQ~~~--v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
+++.. ++++|..+++=|+..+.|..||+ .| ...+.. +..|-++..++.+..+......
T Consensus 346 vDiP~-~~~~i~~~~t~S~~~~~Q~lGR~-----LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 346 VDIPD-ADVLIILRPTGSRRLFIQRLGRG-----LRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CCCCC-CCEEEEECCCCCHHHHHHHHHHH-----HCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 57888-75799977998799999996166-----347889996599999645676443326666433
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=98.70 E-value=1.6e-07 Score=61.12 Aligned_cols=101 Identities=14% Similarity=0.191 Sum_probs=80.9
Q ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 999986148997110578999999987653----------------0477823489999997278986999721443233
Q gi|254780130|r 59 LEVIIEKANAAPIIVAYHFNSDLARLQKAF----------------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
+.+++++ +..++||+|-+...|.+-..+ .++-..+.|..+.+.|.+|+.++++|+. |...|
T Consensus 277 l~~~i~~--~~~tLvF~NtR~~aE~~~~~L~~~~~~~~~~~~i~~HHgSls~e~R~~vE~~lk~G~l~~vV~Ts-SLELG 353 (878)
T PRK13767 277 LDELIQE--HRTTLIFTNTRSGAERVVYKLRKRYPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSST-SLELG 353 (878)
T ss_pred HHHHHHH--CCCEEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEC-HHHCC
T ss_conf 9999983--89779991558999999999998534306754322201778999999999998579986899827-36507
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 224320675897268999888022555576665420265775399
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205)
|+.-. -+.||.+..|.+.+.+.|+.||=. ||+|......+
T Consensus 354 IDiG~-Vd~Viq~gsP~svarllQR~GRsG----H~~g~~s~g~~ 393 (878)
T PRK13767 354 IDIGY-IDLVVLLGSPKSVSRLLQRIGRAG----HRLGEVSKGRI 393 (878)
T ss_pred CCCCC-CCEEEECCCCHHHHHHHHHHCCCC----CCCCCEEEEEE
T ss_conf 77775-258997589611899999833578----99998046999
No 41
>KOG0383 consensus
Probab=98.52 E-value=2.5e-07 Score=60.09 Aligned_cols=120 Identities=13% Similarity=0.134 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHCCCCHHCCCCCCC----CC------CCHHHHHHHHHHHHH--CCCC
Q ss_conf 35899999999973578320999999999998860770003445654----20------572343349999861--4899
Q gi|254780130|r 2 KQYHKFQRELYCDLQGENIEAFNSASKTVKCLQLANGAVYYDEEKHW----KE------VHDEKIKALEVIIEK--ANAA 69 (205)
Q Consensus 2 k~Y~~l~~~~~~~~~~~~i~a~~~~~~~~kL~Ql~~g~~~~d~~~~~----~~------~~~~Kl~~l~~ii~~--~~~~ 69 (205)
|+|+.+...-..-+.. .+...+...-++.|++.|+|+-.++-.... .. ..+.|+..|...+.. ..|+
T Consensus 554 ~~yk~~~t~n~~~l~~-~~~~~s~~n~~mel~K~~~hpy~~~~~e~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~~~gh 632 (696)
T KOG0383 554 KYYKKILTRNWQGLLA-GVHQYSLLNIVMELRKQCNHPYLSPLEEPLEENGEYLGSALIKASGKLTLLLKMLKKLKSSGH 632 (696)
T ss_pred HHHHHHHCCCHHHHHH-CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 9999987277277752-005689999999999863475537631201200688999999987789999999998773432
Q ss_pred CEEEHHHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHCCCC--CEEEECHHHHHHH
Q ss_conf 71105789999999876---------53047782348999999727898--6999721443233
Q gi|254780130|r 70 PIIVAYHFNSDLARLQK---------AFPQGRTLDKDPCTIQEWNEGKI--PLLFAHPASCGHG 122 (205)
Q Consensus 70 kviVf~~f~~~l~~l~~---------~~~~~~~~~~r~~~i~~f~~~~~--~Vll~~~~a~g~G 122 (205)
+|+||++|..-++.|+- ++.|+.+...|+.+++.||.++. -+|+++++|||.|
T Consensus 633 rvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383 633 RVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRFNAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHCCCCCCCCCCCEEEEEECCCCCCC
T ss_conf 4689999999998868887406741011487666056652256679975412888511456689
No 42
>KOG0332 consensus
Probab=98.50 E-value=9.6e-07 Score=56.85 Aligned_cols=125 Identities=18% Similarity=0.288 Sum_probs=90.3
Q ss_pred CHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 7234334999986148997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|+++|.++-....=-..||||+-+.+..+|...+ .|..+..+|..+++.|..|+.+||+.+ ...+-
T Consensus 314 ~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitT-nV~AR 392 (477)
T KOG0332 314 RDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITT-NVCAR 392 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEE-CHHHC
T ss_conf 16679999998701111005899962026999999998437536785065306788999999865760699870-11123
Q ss_pred HHHHHHHCCEEEEECCCCC------HHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 3224320675897268999------8880225555766654202657753999998388958999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWD------LEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
||+.+ ..+.+|.||+|-. ++.|.-++|| +-|+|.+.-. +- |+- +.....++.++.+
T Consensus 393 GiDv~-qVs~VvNydlP~~~~~~pD~etYlHRiGR-----tGRFGkkG~a-~n-~v~-~~~s~~~mn~iq~ 454 (477)
T KOG0332 393 GIDVA-QVSVVVNYDLPVKYTGEPDYETYLHRIGR-----TGRFGKKGLA-IN-LVD-DKDSMNIMNKIQK 454 (477)
T ss_pred CCCCC-EEEEEEECCCCCCCCCCCCHHHHHHHHCC-----CCCCCCCCEE-EE-EEC-CCCCHHHHHHHHH
T ss_conf 56531-37999944776455789877889887023-----4656655248-98-641-6575899999999
No 43
>TIGR00603 rad25 DNA repair helicase rad25; InterPro: IPR001161 Xeroderma pigmentosum (XP) is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair , . XP-G can be corrected by a 133 Kd nuclear protein, XPGC . XPGC is an acidic protein that confers normal UV resistance in expressing cells . It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms , . XPGC cleaves one strand of the duplex at the border with the single-stranded region . XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases , ; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C-terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents XP group B (XP-B) give rise to both XP and Cockayne syndrome . The DNA/RNA helicase domain IPR001650 from INTERPRO is also present in this group of proteins.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006289 nucleotide-excision repair, 0005634 nucleus.
Probab=98.46 E-value=3.6e-07 Score=59.22 Aligned_cols=125 Identities=19% Similarity=0.291 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHH--HC-CCCCEEEHHHHHHH----HHHHHHHHHCC-CCHHHHHHHHHHHH-CCCCCEEEECHHHHHHH
Q ss_conf 7234334999986--14-89971105789999----99987653047-78234899999972-78986999721443233
Q gi|254780130|r 52 HDEKIKALEVIIE--KA-NAAPIIVAYHFNSD----LARLQKAFPQG-RTLDKDPCTIQEWN-EGKIPLLFAHPASCGHG 122 (205)
Q Consensus 52 ~~~Kl~~l~~ii~--~~-~~~kviVf~~f~~~----l~~l~~~~~~~-~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~G 122 (205)
+-.|..+..-+|. |- .|.|+|||+.-.-- .-.|.+-|+-| .+-.+|-.+.+.|+ +++++.+++| +.|-..
T Consensus 494 NP~KFrACqFLI~fHE~~RgDKIIVFsDNVfAL~~YA~kl~KpfIYGpTsq~ER~~IL~nF~~n~~vnTIF~S-KVGDtS 572 (756)
T TIGR00603 494 NPNKFRACQFLIRFHERQRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFKHNPKVNTIFLS-KVGDTS 572 (756)
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEE-EECCCC
T ss_conf 8644357789888854148885899424478999999873896540798713799998621558864568984-302775
Q ss_pred HHHHHHCCEEEEECCCCCHHHHH-HHHHHHHHHHHHCCC------CCCCEEEEEEEECCCHHH
Q ss_conf 22432067589726899988802-255557666542026------577539999983889589
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQ-QMIERIGVTRQRQAG------FKRAVFVYYLIAQNTIDE 178 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~-Qa~~Ri~~~r~hR~G------Q~~~v~v~~l~~~~tiEe 178 (205)
|+|.. ||++|-.|-+.=.=+.+ |+.|||-|....-.+ -.-+-+.|-|+++||.|=
T Consensus 573 iDlPE-AnvlIQiSSH~GSRRQEAQRLGRILRAK~~~~~r~aggkE~YNAFFYSLVS~DTqEm 634 (756)
T TIGR00603 573 IDLPE-ANVLIQISSHYGSRRQEAQRLGRILRAKKKSDARMAGGKEEYNAFFYSLVSKDTQEM 634 (756)
T ss_pred CCCCC-CCEEEEEEECCCCHHHHHHHCCCCCCCCCCCHHHHCCCCCCCCEEEEECCCCCCEEE
T ss_conf 14221-426776532677403687641320167875133313776442201210134451465
No 44
>KOG0350 consensus
Probab=98.44 E-value=1.9e-06 Score=55.21 Aligned_cols=122 Identities=13% Similarity=0.159 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH--------------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 4334999986148997110578999999987653--------------04778234899999972789869997214432
Q gi|254780130|r 55 KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 55 Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~--------------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
|.-++..+|...+..+.|+|++-.+...+|...| .++...+.|...++.|+.|+++||+|+ .+.+
T Consensus 416 kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcS-D~la 494 (620)
T KOG0350 416 KPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICS-DALA 494 (620)
T ss_pred CHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEH-HHHH
T ss_conf 437699999774010489995246889999999999862644025565234438899999998753895299852-3655
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 3322432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
-|+++- ....||.||+|-+...|.-+.||-+ |.||..-+ |.++... |.+....+.+|
T Consensus 495 RGiDv~-~v~~VINYd~P~~~ktyVHR~GRTA-----RAgq~G~a--~tll~~~--~~r~F~klL~~ 551 (620)
T KOG0350 495 RGIDVN-DVDNVINYDPPASDKTYVHRAGRTA-----RAGQDGYA--ITLLDKH--EKRLFSKLLKK 551 (620)
T ss_pred CCCCCC-CCCEEEECCCCCHHHHHHHHHCCCC-----CCCCCCEE--EEEECCC--CCHHHHHHHHH
T ss_conf 477602-4604763589812657877602210-----05677447--8963155--40379999987
No 45
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.42 E-value=6.2e-06 Score=52.35 Aligned_cols=103 Identities=15% Similarity=0.189 Sum_probs=81.5
Q ss_pred HCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf 148997110578999999987653----------0477823489999997278986999721443233224320675897
Q gi|254780130|r 65 KANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205)
Q Consensus 65 ~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205)
...+..-||+|.-+...+.+...+ .+|...+.|+..-+.|..++.+|++++ .|-|+|||=.. ...|||
T Consensus 227 ~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT-~AFGMGIdKpd-VRfViH 304 (590)
T COG0514 227 PQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDEIKVMVAT-NAFGMGIDKPD-VRFVIH 304 (590)
T ss_pred CCCCCCEEEEEEEHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEEE-CCCCCCCCCCC-CEEEEE
T ss_conf 2468972899933775999999999779725775189889999999999716998689996-46247767888-407998
Q ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCH
Q ss_conf 268999888022555576665420265775399999838895
Q gi|254780130|r 135 FSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTI 176 (205)
Q Consensus 135 ~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ti 176 (205)
|++|-|.+.|.|=.|| |-|-|....+.. |....-+
T Consensus 305 ~~lP~s~EsYyQE~GR-----AGRDG~~a~ail--l~~~~D~ 339 (590)
T COG0514 305 YDLPGSIESYYQETGR-----AGRDGLPAEAIL--LYSPEDI 339 (590)
T ss_pred ECCCCCHHHHHHHHHH-----CCCCCCCCEEEE--EECCCCH
T ss_conf 0699898999999713-----567877021788--6063007
No 46
>KOG0344 consensus
Probab=98.37 E-value=3.2e-06 Score=53.99 Aligned_cols=112 Identities=16% Similarity=0.237 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 2343349999861489971105789999999876530-----------47782348999999727898699972144323
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
..|+-++++++.+.-.-+++||.+..+-...|-+.++ +..+..+|+..++.|..|++.||+|+ ...+-
T Consensus 372 ~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicT-dll~R 450 (593)
T KOG0344 372 KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICT-DLLAR 450 (593)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEH-HHHHC
T ss_conf 45778899998615899748988538889999998642357663467636666677899999850670688850-46654
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf 3224320675897268999888022555576665420265775399999838
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205)
|++++ ..|.||.||.|-+...|...+||. -|.|+...- |.|.++
T Consensus 451 GiDf~-gvn~VInyD~p~s~~syihrIGRt-----gRag~~g~A--itfytd 494 (593)
T KOG0344 451 GIDFK-GVNLVINYDFPQSDLSYIHRIGRT-----GRAGRSGKA--ITFYTD 494 (593)
T ss_pred CCCCC-CCCEEEECCCCCHHHHHHHHHHCC-----CCCCCCCCE--EEEECC
T ss_conf 55645-763689537872247888873025-----788988616--998632
No 47
>KOG0336 consensus
Probab=98.37 E-value=2.6e-06 Score=54.42 Aligned_cols=126 Identities=15% Similarity=0.266 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 723433499998614-899711057899999998765----------304778234899999972789869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
.+.|+.....+++.. +..|+|||+.-+...+.|..- +.++..-.-|+.+++.|.+|.+++|+++ .-++
T Consensus 448 d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaT-DlaS 526 (629)
T KOG0336 448 DSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSGEVRILVAT-DLAS 526 (629)
T ss_pred CHHHHHHHHHHHHHCCCCCEEEEEEECHHHHHHCCCHHHHCCCCHHHCCCCHHHHHHHHHHHHHHCCCEEEEEEE-CHHH
T ss_conf 189999999999855888618999831032210231021146101102587224359999976415816999972-2343
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC--CHHHHHHHHHHH
Q ss_conf 332243206758972689998880225555766654202657753999998388--958999999999
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN--TIDELVLQRLRT 186 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~--tiEe~i~~~l~~ 186 (205)
-||++.. -.+++.||-|-|-+.|.-+.||. -|.|.+-.. ..+++.+ +.-+...+.|.+
T Consensus 527 RGlDv~D-iTHV~NyDFP~nIeeYVHRvGrt-----GRaGr~G~s--is~lt~~D~~~a~eLI~ILe~ 586 (629)
T KOG0336 527 RGLDVPD-ITHVYNYDFPRNIEEYVHRVGRT-----GRAGRTGTS--ISFLTRNDWSMAEELIQILER 586 (629)
T ss_pred CCCCCHH-CCEEECCCCCCCHHHHHHHHCCC-----CCCCCCCCE--EEEEEHHHHHHHHHHHHHHHH
T ss_conf 3788200-20354057875599999871235-----657777632--788863047779999999998
No 48
>KOG0351 consensus
Probab=98.30 E-value=2.2e-06 Score=54.83 Aligned_cols=136 Identities=18% Similarity=0.261 Sum_probs=96.6
Q ss_pred HHHHHHHCCCCHH---CCCCCCCCCCCHHH-HHHHHHHHH----HCCCCCEEEHHHHHHHHHHHHHH----------HHC
Q ss_conf 9999886077000---34456542057234-334999986----14899711057899999998765----------304
Q gi|254780130|r 29 TVKCLQLANGAVY---YDEEKHWKEVHDEK-IKALEVIIE----KANAAPIIVAYHFNSDLARLQKA----------FPQ 90 (205)
Q Consensus 29 ~~kL~Ql~~g~~~---~d~~~~~~~~~~~K-l~~l~~ii~----~~~~~kviVf~~f~~~l~~l~~~----------~~~ 90 (205)
+...+-|.+..+. ++.+.....+...+ -+.+.++.. -.++...||.|..+.+.+.+... +..
T Consensus 438 Ii~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHA 517 (941)
T KOG0351 438 VIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHA 517 (941)
T ss_pred HHHHHCCCCCCEECCCCCCCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHCHHHHHHHC
T ss_conf 99982788863222567998855999856675316889887651289998379968823199999999873520575526
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 77823489999997278986999721443233224320675897268999888022555576665420265775399999
Q gi|254780130|r 91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170 (205)
Q Consensus 91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l 170 (205)
|.+..+|..+-..|..++++|+++++ |-|.|||--. ..-||+|++|=+.+-|.|..|| |-|-|+-..|..|+=
T Consensus 518 Gl~~~~R~~Vq~~w~~~~~~VivATV-AFGMGIdK~D-VR~ViH~~lPks~E~YYQE~GR-----AGRDG~~s~C~l~y~ 590 (941)
T KOG0351 518 GLPPKERETVQKAWMSDKIRVIVATV-AFGMGIDKPD-VRFVIHYSLPKSFEGYYQEAGR-----AGRDGLPSSCVLLYG 590 (941)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEE-ECCCCCCCCC-EEEEEECCCCHHHHHHHHHCCC-----CCCCCCCCEEEEECC
T ss_conf 78878889999998568870899985-2247877786-3599977786147888874033-----676788002677426
Q ss_pred E
Q ss_conf 8
Q gi|254780130|r 171 I 171 (205)
Q Consensus 171 ~ 171 (205)
.
T Consensus 591 ~ 591 (941)
T KOG0351 591 Y 591 (941)
T ss_pred H
T ss_conf 1
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=98.26 E-value=1.5e-05 Score=50.29 Aligned_cols=106 Identities=16% Similarity=0.252 Sum_probs=71.8
Q ss_pred CCCCEEEHHHHHHHHHHHH----H------------------------HHH-------CCCCHHHHHHHHHHHHCCCCCE
Q ss_conf 8997110578999999987----6------------------------530-------4778234899999972789869
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQ----K------------------------AFP-------QGRTLDKDPCTIQEWNEGKIPL 111 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~----~------------------------~~~-------~~~~~~~r~~~i~~f~~~~~~V 111 (205)
+|.+++||+.-+...+.+. + .+. .|-+.+.|+-+.+.|++|.++|
T Consensus 235 ~~~~~LVF~~sR~~~e~~A~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GVafHHaGL~~~eR~lVE~~f~~g~i~v 314 (674)
T PRK01172 235 DGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKV 314 (674)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHHHHHHCCCHHCCHHHHHCCCHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 69947999507588999999999853210100103154311209999999628283068999899999999998699649
Q ss_pred EEECHHHHHHHHHHHHHCCEEEEEC---------CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 9972144323322432067589726---------899988802255557666542026577539999983889589999
Q gi|254780130|r 112 LFAHPASCGHGLNLQYGGNILVFFS---------LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181 (205)
Q Consensus 112 ll~~~~a~g~GlnL~~a~~~vI~~~---------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~ 181 (205)
+++++. -+.|+||. |.+||+-+ .+.++..|.|..|| |-|.|....-..+-+++.. -|..+.
T Consensus 315 l~aT~T-LAaGVNlP--Ar~VIi~~~~r~~~~~~~~l~~~e~~QM~GR-----AGR~g~D~~G~~ii~~~~~-~~~~~~ 384 (674)
T PRK01172 315 IVATPT-LAAGVNLP--ARLVIVRDITRYGNGGIRYLSNMEIKQMIGR-----AGRPGYDQYGIGYIYAASP-ASYDAA 384 (674)
T ss_pred EEECCH-HHHHCCCC--EEEEEEEEEEEECCCCEEECCHHHHHHHCCC-----CCCCCCCCCCCEEEEECCC-HHHHHH
T ss_conf 971446-76544786--0599993007817997157778989986135-----8999999887089997282-289999
No 50
>TIGR01389 recQ ATP-dependent DNA helicase RecQ; InterPro: IPR006293 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0004003 ATP-dependent DNA helicase activity, 0006310 DNA recombination, 0009432 SOS response.
Probab=98.23 E-value=3.7e-06 Score=53.61 Aligned_cols=131 Identities=17% Similarity=0.179 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHC-CCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 23433499998614-8997110578999999987653----------047782348999999727898699972144323
Q gi|254780130|r 53 DEKIKALEVIIEKA-NAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~-~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
.+|.+-|.+.|... +|..=||.|.-+..+|.|...| ..|-..+.|.+.-+.|...+..|.++| .|=|+
T Consensus 210 ~n~~~~l~~yl~~~~~G~SGIIYa~sR~~VE~~~~~L~s~G~~A~~YHAGL~~~~R~e~Q~~Fl~d~~~vmVAT-~AFGM 288 (607)
T TIGR01389 210 NNKKKFLLEYLKKHREGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDDVKVMVAT-NAFGM 288 (607)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHCCEEEEEE-ECCCC
T ss_conf 37813689997507999534787677045899999997479620403679877689999754446255488887-12358
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE-E---------EEEECCCHHHHHHHHHHHHHHH
Q ss_conf 3224320675897268999888022555576665420265775399-9---------9983889589999999999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV-Y---------YLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v-~---------~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
|||=.. ..-|||+|+|=|-+.|.|=-|| |=|=|++.++-. | ++|...-.++..-+.-..|++-
T Consensus 289 GIdKpn-VRFViH~d~P~~~EsYYQE~GR-----AGRDGlpae~~lly~~~D~~l~~~~I~~s~~~~~~K~~e~~KL~~ 361 (607)
T TIGR01389 289 GIDKPN-VRFVIHADMPKNIESYYQEAGR-----AGRDGLPAEAILLYSLADIALLKRFIEQSEADEDRKQIEREKLDA 361 (607)
T ss_pred CCCCCC-CCEEEEECCCCCHHHHHCCCCC-----CCCCCCHHHHHHHCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 747876-5488863687421113103554-----688752677867247778999999974158848899999999999
No 51
>KOG0348 consensus
Probab=98.22 E-value=1.9e-05 Score=49.74 Aligned_cols=89 Identities=13% Similarity=0.243 Sum_probs=65.8
Q ss_pred HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 04778234899999972789869997214432332243206758972689998880225555766654202657753999
Q gi|254780130|r 89 PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 89 ~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
.|+..-..|......|....--|++|+ ..++-||+|.. ...+|-|++|+++++|.-++||-+ |+|-+-.-..
T Consensus 478 HGsm~QeeRts~f~~Fs~~~~~VLLcT-DVAaRGLDlP~-V~~vVQYd~P~s~adylHRvGRTA-----RaG~kG~alL- 549 (708)
T KOG0348 478 HGSMEQEERTSVFQEFSHSRRAVLLCT-DVAARGLDLPH-VGLVVQYDPPFSTADYLHRVGRTA-----RAGEKGEALL- 549 (708)
T ss_pred CCCHHHHHHHHHHHHHCCCCCEEEEEH-HHHHCCCCCCC-CCEEEEECCCCCHHHHHHHHHHHH-----HCCCCCCEEE-
T ss_conf 274348899999875303544278850-34542688877-676998279998899999840454-----3467771578-
Q ss_pred EEEECCCHHHHHHHHHHHHH
Q ss_conf 99838895899999999999
Q gi|254780130|r 169 YLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 169 ~l~~~~tiEe~i~~~l~~K~ 188 (205)
|++. .|......|..+.
T Consensus 550 -fL~P--~Eaey~~~l~~~~ 566 (708)
T KOG0348 550 -FLLP--SEAEYVNYLKKHH 566 (708)
T ss_pred -EECC--CHHHHHHHHHHHC
T ss_conf -8665--1799999887502
No 52
>KOG1123 consensus
Probab=98.21 E-value=1.7e-05 Score=50.00 Aligned_cols=124 Identities=19% Similarity=0.240 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHH----HHHHHHHC-CCCHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHH
Q ss_conf 2343349999861--48997110578999999----98765304-778234899999972-7898699972144323322
Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA----RLQKAFPQ-GRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLN 124 (205)
Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~----~l~~~~~~-~~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~Gln 124 (205)
..|..+..-+|.- ..|.|+|||+.-.--+. .+.+-|.- +..-.+|-.+...|+ ++.+..+++| +.|-..++
T Consensus 526 P~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlS-KVgDtSiD 604 (776)
T KOG1123 526 PNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFLS-KVGDTSID 604 (776)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEE-ECCCCCCC
T ss_conf 40337889999999864983899825088999999970896377888555899999853448733348875-03576556
Q ss_pred HHHHCCEEEEECCCCCHHHH-HHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHH
Q ss_conf 43206758972689998880-22555576665420265775399999838895899
Q gi|254780130|r 125 LQYGGNILVFFSLWWDLEEH-QQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDEL 179 (205)
Q Consensus 125 L~~a~~~vI~~~~~~n~~~~-~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~ 179 (205)
|.. ||++|-.|...-.-+. .|+.|||.|... |---.-+.+.|-|++++|.|-.
T Consensus 605 LPE-AnvLIQISSH~GSRRQEAQRLGRILRAKk-~~de~fnafFYSLVS~DTqEM~ 658 (776)
T KOG1123 605 LPE-ANVLIQISSHGGSRRQEAQRLGRILRAKK-RNDEEFNAFFYSLVSKDTQEMY 658 (776)
T ss_pred CCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-CCCCCCCEEEEEEEECCHHHHH
T ss_conf 776-60899972456622789999889987763-3760200024443106418877
No 53
>KOG0343 consensus
Probab=98.21 E-value=2e-05 Score=49.52 Aligned_cols=126 Identities=15% Similarity=0.169 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH------------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 23433499998614899711057899999998765------------304778234899999972789869997214432
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA------------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~------------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
..|++.|-.+|......|.|||..--..+.-+... |.|...-.+|......|.....-||+|+ ..++
T Consensus 298 ~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~T-Dv~a 376 (758)
T KOG0343 298 EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCT-DVAA 376 (758)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHCCEEEEEE-HHHH
T ss_conf 147899999998452543699986006899999999850899832542163137788999999987555589860-2554
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHH
Q ss_conf 33224320675897268999888022555576665420265775399999838895899999999999
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKS 188 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~ 188 (205)
-||++. |.++||-+|.|-+...|.-+.||.+ |++-..++.++- + -+=+|.++..|..|.
T Consensus 377 RGLDFp-aVdwViQ~DCPedv~tYIHRvGRtA-----R~~~~G~sll~L--~-psEeE~~l~~Lq~k~ 435 (758)
T KOG0343 377 RGLDFP-AVDWVIQVDCPEDVDTYIHRVGRTA-----RYKERGESLLML--T-PSEEEAMLKKLQKKK 435 (758)
T ss_pred CCCCCC-CCCEEEEECCCHHHHHHHHHHHHHH-----CCCCCCCEEEEE--C-CHHHHHHHHHHHHCC
T ss_conf 368986-4336998068205889998721221-----136778568997--6-316999999998758
No 54
>KOG0326 consensus
Probab=98.19 E-value=3.6e-06 Score=53.69 Aligned_cols=124 Identities=18% Similarity=0.255 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530477----------823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~----------~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
+.|+--|..+.....=...||||+-...++.|.+...+-. .-+.|.....+|.+|.++.|+|+- ----|
T Consensus 307 ~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctD-L~TRG 385 (459)
T KOG0326 307 RQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTD-LFTRG 385 (459)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHH-HHHCC
T ss_conf 55556499898875004459996363176798988886164366778888776542455654325320124202-33046
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 22432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
++.| |.|++|.||-|-+++.|.-++||- -|+|--- .-..|++-+ |...+.+++.+
T Consensus 386 IDiq-avNvVINFDfpk~aEtYLHRIGRs-----GRFGhlG--lAInLitye--drf~L~~IE~e 440 (459)
T KOG0326 386 IDIQ-AVNVVINFDFPKNAETYLHRIGRS-----GRFGHLG--LAINLITYE--DRFNLYRIEQE 440 (459)
T ss_pred CCCC-EEEEEEECCCCCCHHHHHHHCCCC-----CCCCCCC--EEEEEEEHH--HHHHHHHHHHH
T ss_conf 5541-025999637887778999871677-----6578762--479987503--24438899998
No 55
>KOG0341 consensus
Probab=98.16 E-value=3.6e-06 Score=53.70 Aligned_cols=120 Identities=18% Similarity=0.304 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 234334999986148997110578999999987653----------0477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
..|+-.|.+.++.. .-||+||+.-+.+++.|.+-+ .+|..-..|..+++.|..++-.||+++ ..|+-|
T Consensus 407 EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~afr~gkKDVLVAT-DVASKG 484 (610)
T KOG0341 407 EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVAT-DVASKG 484 (610)
T ss_pred HHHHHHHHHHHCCC-CCCEEEEECCCCCHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CCHHCC
T ss_conf 30120699876127-9966998414567478999998725136874168656678889999865787458873-100036
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 224320675897268999888022555576665420265775399999838895899999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~ 182 (205)
|+++. -.++|.||.|-.-+.|.-++||- -|-|.+. .-..|+-+++=+...++
T Consensus 485 LDFp~-iqHVINyDMP~eIENYVHRIGRT-----GRsg~~G--iATTfINK~~~esvLlD 536 (610)
T KOG0341 485 LDFPD-IQHVINYDMPEEIENYVHRIGRT-----GRSGKTG--IATTFINKNQEESVLLD 536 (610)
T ss_pred CCCCC-CHHHCCCCCHHHHHHHHHHHCCC-----CCCCCCC--EEEEEECCCCHHHHHHH
T ss_conf 89745-04440478808899999971246-----7788864--02221145631888987
No 56
>PRK00254 ski2-like helicase; Provisional
Probab=98.15 E-value=4.7e-05 Score=47.51 Aligned_cols=83 Identities=17% Similarity=0.221 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC---------CCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 77823489999997278986999721443233224320675897268---------999888022555576665420265
Q gi|254780130|r 91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL---------WWDLEEHQQMIERIGVTRQRQAGF 161 (205)
Q Consensus 91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~---------~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205)
|-+.+.|.-+.+.|.+|.++|+++++. -+.|+||. |.+||+-++ +.++..|.|..|| |-|.|-
T Consensus 303 GL~~~~R~lVE~~Fr~g~Ikvl~aTsT-LA~GVNLP--Ar~VIi~~~~~~~~~g~~~i~~~e~~QM~GR-----AGR~G~ 374 (717)
T PRK00254 303 GLGRDERVLVEDNFRKGLIKVVVATPT-LSAGINTP--AFRVIIRDTWRYSEFGMERIPVLEIQQMMGR-----AGRPKY 374 (717)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCH-HHCCCCCC--CEEEEEECCEEECCCCCEECCHHHHHHHHHH-----CCCCCC
T ss_conf 999889999999998799589981644-65045776--0599992656707997237875368886250-----699987
Q ss_pred CCCEEEEEEEECCCHHHHHHH
Q ss_conf 775399999838895899999
Q gi|254780130|r 162 KRAVFVYYLIAQNTIDELVLQ 182 (205)
Q Consensus 162 ~~~v~v~~l~~~~tiEe~i~~ 182 (205)
...=..+ ++++..-.+++++
T Consensus 375 D~~G~~i-ii~~~~~~~~~~~ 394 (717)
T PRK00254 375 DEVGEAI-IVSTTEDPSKVMD 394 (717)
T ss_pred CCCCEEE-EEECCCCHHHHHH
T ss_conf 8885089-9954857899999
No 57
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=98.13 E-value=4.8e-05 Score=47.47 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH-----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 43349999861489971105789999999876530-----------4778234899999972789869997214432332
Q gi|254780130|r 55 KIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP-----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 55 Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~-----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
-++.+-+++++ .+..+||+|-+...+.+-..+. ++...+.|..+.++|.+|+.++++|+ .+.-.||
T Consensus 242 ~~~~i~~~v~~--~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~T-SSLELGI 318 (814)
T COG1201 242 LYERIAELVKK--HRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKEGELKAVVAT-SSLELGI 318 (814)
T ss_pred HHHHHHHHHHH--CCCEEEEEECHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCEEEEEC-CCHHHCC
T ss_conf 99999999961--68589997272789999999987268755653166657789999999866886299980-6422050
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH
Q ss_conf 24320675897268999888022555576665420265775399999838895899999
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ 182 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~ 182 (205)
+.= .-+.||.+..|-+-....|.+||-. ||.|.... .++++.+ .|+.+--
T Consensus 319 DiG-~vdlVIq~~SP~sV~r~lQRiGRsg----Hr~~~~Sk---g~ii~~~-r~dllE~ 368 (814)
T COG1201 319 DIG-DIDLVIQLGSPKSVNRFLQRIGRAG----HRLGEVSK---GIIIAED-RDDLLEC 368 (814)
T ss_pred CCC-CCEEEEEECCCHHHHHHHHHCCCCC----CCCCCCCC---EEEEECC-HHHHHHH
T ss_conf 247-7429998179388888868503146----65688642---7998167-9999999
No 58
>KOG0335 consensus
Probab=98.06 E-value=4.8e-05 Score=47.47 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=87.0
Q ss_pred CHHHHHHHHHHHHHCC---------CCCEEEHHHHHHHHHHHHHHH----------HCCCCHHHHHHHHHHHHCCCCCEE
Q ss_conf 7234334999986148---------997110578999999987653----------047782348999999727898699
Q gi|254780130|r 52 HDEKIKALEVIIEKAN---------AAPIIVAYHFNSDLARLQKAF----------PQGRTLDKDPCTIQEWNEGKIPLL 112 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~---------~~kviVf~~f~~~l~~l~~~~----------~~~~~~~~r~~~i~~f~~~~~~Vl 112 (205)
.+.|...|.+++.... .++++||+.-+.-.+.+...+ .+..+-.+|..+++.|.++..+++
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvl 391 (482)
T KOG0335 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKAPVL 391 (482)
T ss_pred CHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 11357899988613467866577643138999613003269999986179874560332556379999877646986679
Q ss_pred EECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CHHHHHHHHHHH
Q ss_conf 97214432332243206758972689998880225555766654202657753999998388-958999999999
Q gi|254780130|r 113 FAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRLRT 186 (205)
Q Consensus 113 l~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~-tiEe~i~~~l~~ 186 (205)
+++ ..++-|||.-. ..++|.||+|-...+|.-++||- -|-|+.--.+...= ..+ .|=+...+.+.+
T Consensus 392 VaT-~VaaRGlDi~~-V~hVInyDmP~d~d~YvHRIGRT-----GR~Gn~G~atsf~n-~~~~~i~~~L~~~l~e 458 (482)
T KOG0335 392 VAT-NVAARGLDIPN-VKHVINYDMPADIDDYVHRIGRT-----GRVGNGGRATSFFN-EKNQNIAKALVEILTE 458 (482)
T ss_pred EEE-HHHHCCCCCCC-CCEEEEEECCCCHHHHHHHCCCC-----CCCCCCCEEEEEEC-CCCCHHHHHHHHHHHH
T ss_conf 870-36654788768-74358863675246677741543-----55777732688764-7430068999999998
No 59
>KOG0334 consensus
Probab=98.06 E-value=3.2e-05 Score=48.46 Aligned_cols=124 Identities=18% Similarity=0.238 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHH-CCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 72343349999861-4899711057899999998765----------304778234899999972789869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEK-ANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~-~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
.+.|+..|.+++.+ .++.++|||+.-.+..+.|... ++++..-..|...+++|.++.+.+|+++-- ++
T Consensus 596 e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsv-va 674 (997)
T KOG0334 596 ENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSV-VA 674 (997)
T ss_pred CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHHCCCCEEEEEHHH-HH
T ss_conf 36779999999998862488799984714788999999856860543057875677885899974567428985145-42
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC--CHHHHHHHHH
Q ss_conf 332243206758972689998880225555766654202657753999998388--9589999999
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN--TIDELVLQRL 184 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~--tiEe~i~~~l 184 (205)
-||+.- .-..+|.||.|--.++|.-+.+| +-|.|.+- .-+.|++.+ .++..|.+.+
T Consensus 675 rGLdv~-~l~Lvvnyd~pnh~edyvhR~gR-----Tgragrkg--~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334 675 RGLDVK-ELILVVNYDFPNHYEDYVHRVGR-----TGRAGRKG--AAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred CCCCCC-CEEEEEECCCCHHHHHHHHHHCC-----CCCCCCCC--EEEEEECHHHHHHHHHHHHHH
T ss_conf 676665-40589973663127999998513-----56677763--379985778864378899999
No 60
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family; InterPro: IPR004589 The ATP-dependent DNA helicase RecQ (3.6.1 from EC) is involved in genome maintenance . All homologues tested to date unwind paired DNA, translocating in a 3' to 5' direction and several have a preference for forked or 4-way DNA structures (e.g. Holliday junctions) or for G-quartet DNA. The yeast protein, Sgs1, is present in numerous foci that coincide with sites of de novo synthesis DNA, such as the replication fork, and protein levels peak during S-phase. A model has been proposed for Sgs1p action in the S-phase checkpoint response, both as a 'sensor' for damage during replication and a 'resolvase' for structures that arise at paused forks, such as the four-way 'chickenfoot' structure. The action of Sgs1p may serve to maintain the proper amount and integrity of ss DNA that is necessary for the binding of RPA (replication protein A, the eukaryotic ss DNA-binding protein)DNA pol complexes. Sgs1p would thus function by detecting (or resolving) aberrant DNA structures, and would thus contribute to the full activation of the DNA-dependent protein kinase, Mec1p and the effector kinase, Rad53p. Its ability to bind both the large subunit of RPA and the RecA-like protein Rad51p, place it in a unique position to resolve inappropriate fork structures that can occur when either the leading or lagging strand synthesis is stalled. Thus, RecQ helicases integrate checkpoint activation and checkpoint response. ; GO: 0008026 ATP-dependent helicase activity, 0006310 DNA recombination.
Probab=98.02 E-value=1.9e-05 Score=49.67 Aligned_cols=119 Identities=15% Similarity=0.192 Sum_probs=91.8
Q ss_pred HHHHHHHHH-------HCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHH-CCCCCEEEECHH
Q ss_conf 334999986-------14899711057899999998765----------304778234899999972-789869997214
Q gi|254780130|r 56 IKALEVIIE-------KANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPA 117 (205)
Q Consensus 56 l~~l~~ii~-------~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~ 117 (205)
+.-|..++. +.+|..=||+|.-+...+.+... +.-|.....|.++-++|. ..+++|.++|.
T Consensus 222 ~~dl~~f~~~~~~s~~~~~G~sGIIYC~SR~~~e~~a~~L~~~G~~a~aYHAGl~~~~R~~V~~~f~nrD~~QvVvATv- 300 (497)
T TIGR00614 222 LEDLLRFIVKKASSAWEFKGKSGIIYCPSRKKSEQVAAELQKLGIAAGAYHAGLEISARKEVQHKFQNRDEIQVVVATV- 300 (497)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHCCCEEEHHHCCCCHHHHHHHHHHHHCCCCCEEEEEEE-
T ss_conf 9999999875203565245883027528723489999999755861002402688647789999875038857999872-
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 4323322432067589726899988802255557666542026577539999983889589999
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~ 181 (205)
|=|.|||=.. -.-||||+.|=+-+.|-|=.|| |-|=|-...|..||=.++=++-..++
T Consensus 301 AFGMGInKpd-vRfViH~~~Pk~~EsYYQE~GR-----AGRDgl~s~c~lfy~~aD~~~~~~~l 358 (497)
T TIGR00614 301 AFGMGINKPD-VRFVIHYSLPKSMESYYQESGR-----AGRDGLPSECVLFYAPADIARLRRLL 358 (497)
T ss_pred ECCCCCCCCC-CCEEEEECCCCCCCCCCCCCCC-----CCCCCCCCCEEEEECHHHHHHHHHHH
T ss_conf 1268887635-3678850788562110135555-----67897320102330435699998874
No 61
>KOG0338 consensus
Probab=97.99 E-value=9.8e-05 Score=45.74 Aligned_cols=113 Identities=17% Similarity=0.278 Sum_probs=80.9
Q ss_pred HHHHHCCCCCEEEHHHHHHHHHHHHHH----------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf 998614899711057899999998765----------3047782348999999727898699972144323322432067
Q gi|254780130|r 61 VIIEKANAAPIIVAYHFNSDLARLQKA----------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGN 130 (205)
Q Consensus 61 ~ii~~~~~~kviVf~~f~~~l~~l~~~----------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~ 130 (205)
.++...-..++|||.+-+....+++-. +.++.+-.+|-..++.|.+..++||+++ ..|+-||+.- +--
T Consensus 419 ~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaT-DvAsRGLDI~-gV~ 496 (691)
T KOG0338 419 SLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIAT-DVASRGLDIE-GVQ 496 (691)
T ss_pred HHHHHHCCCCEEEEEEHHHHHHHHHHHHHHHHCHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCC-CEE
T ss_conf 99987604336999720877889999998730106655054108889999998774568779872-0444467765-516
Q ss_pred EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHH
Q ss_conf 589726899988802255557666542026577539999983889589999999
Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRL 184 (205)
Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l 184 (205)
+||.|..|-+.++|.-+.||-+ |.|..-- -..|+.++ |..+++-+
T Consensus 497 tVINy~mP~t~e~Y~HRVGRTA-----RAGRaGr--sVtlvgE~--dRkllK~i 541 (691)
T KOG0338 497 TVINYAMPKTIEHYLHRVGRTA-----RAGRAGR--SVTLVGES--DRKLLKEI 541 (691)
T ss_pred EEEECCCCHHHHHHHHHHHHHH-----HCCCCCC--EEEEECCC--CHHHHHHH
T ss_conf 8884267526899998740033-----2456764--37874454--08899999
No 62
>PRK02362 ski2-like helicase; Provisional
Probab=97.95 E-value=0.00022 Score=43.84 Aligned_cols=76 Identities=18% Similarity=0.225 Sum_probs=53.5
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC----------CCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 77823489999997278986999721443233224320675897268----------99988802255557666542026
Q gi|254780130|r 91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL----------WWDLEEHQQMIERIGVTRQRQAG 160 (205)
Q Consensus 91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~----------~~n~~~~~Qa~~Ri~~~r~hR~G 160 (205)
|-+...|.-+.+.|++|.++|+++++. -+.|+||. |++||+-+. +.+...|.|..|| |-|.|
T Consensus 312 GL~~~~R~lVE~~Fr~g~Ikvl~aTsT-LA~GVNLP--Ar~VIi~~~~~~~~~~g~~~l~~~e~~QM~GR-----AGRpg 383 (736)
T PRK02362 312 GLSREHRELVEEGFRDGLIKVISSTPT-LAAGLNLP--ARRVIIRDYRRYDSGAGMQPIPVLEYHQMAGR-----AGRPR 383 (736)
T ss_pred CCCHHHHHHHHHHHHCCCCCEEEECCH-HHCCCCCC--EEEEEEECCEEECCCCCCEECCHHHHHHHHHH-----CCCCC
T ss_conf 999899999999998799838972516-65055785--26999804367369888336889999999852-----48998
Q ss_pred CCCCEEEEEEEECCC
Q ss_conf 577539999983889
Q gi|254780130|r 161 FKRAVFVYYLIAQNT 175 (205)
Q Consensus 161 Q~~~v~v~~l~~~~t 175 (205)
-...=..+ +++++.
T Consensus 384 ~D~~G~ai-li~~~~ 397 (736)
T PRK02362 384 LDPYGEAV-LLAKSY 397 (736)
T ss_pred CCCCCEEE-EEECCH
T ss_conf 89886299-996782
No 63
>KOG0327 consensus
Probab=97.89 E-value=4.3e-05 Score=47.72 Aligned_cols=120 Identities=15% Similarity=0.223 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHH
Q ss_conf 2343349999861489971105789999999876530----------477823489999997278986999721443233
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHG 122 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~G 122 (205)
.+|++.|.++.+ +-...+||++-.+.+..+...+. +...-++|......|..|..+||+.+.- .+-|
T Consensus 250 ~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~i~~d~~q~~R~~~~~~f~~g~srvlIttdl-~arg 326 (397)
T KOG0327 250 EEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDL-LARG 326 (397)
T ss_pred CCCCCHHHHHHH--HHHCCEEEECCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCEEEEECCC-CCCC
T ss_conf 311227999998--6431057851045677789998627733787634643003468999864587237741221-2465
Q ss_pred HHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r 123 LNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205)
+++|. ++-+|.|++|-+.+.|.-.++|- -|+|.+-- ...+++++ |+..++...
T Consensus 327 idv~~-~slvinydlP~r~~~yihR~gr~-----gr~grkg~--~in~v~~~--d~~~lk~ie 379 (397)
T KOG0327 327 IDVQQ-VSLVVNYDLPARKENYIHRIGRA-----GRFGRKGV--AINFVTEE--DVRDLKDIE 379 (397)
T ss_pred CCHHH-CCEEEEECCCCCHHHHHHHCCCC-----CCCCCCCE--EEEEEHHH--HHHHHHHHH
T ss_conf 41110-12256501652066666525545-----65677713--55520175--688887389
No 64
>KOG0340 consensus
Probab=97.88 E-value=4.9e-05 Score=47.42 Aligned_cols=91 Identities=12% Similarity=0.199 Sum_probs=73.0
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 8997110578999999987653047----------782348999999727898699972144323322432067589726
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQG----------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~----------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~ 136 (205)
+...++||.|-..+-+.|...|..- .+-.+|-.+..+|.+...++++++ ..|+-||+... ...||.|+
T Consensus 253 ~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaT-DVAsRGLDIP~-V~LVvN~d 330 (442)
T KOG0340 253 ENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSNAARILIAT-DVASRGLDIPT-VELVVNHD 330 (442)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHHCEEEEEHHHCCHHHHHHHHHHHHHHCCCCEEEEE-CHHHCCCCCCC-EEEEEECC
T ss_conf 57608999604689999999996303445431100508889989987762674089973-13432789884-46787068
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 8999888022555576665420265
Q gi|254780130|r 137 LWWDLEEHQQMIERIGVTRQRQAGF 161 (205)
Q Consensus 137 ~~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205)
.|-.|.+|.-+.||-+ ||-|.|-
T Consensus 331 iPr~P~~yiHRvGRtA--RAGR~G~ 353 (442)
T KOG0340 331 IPRDPKDYIHRVGRTA--RAGRKGM 353 (442)
T ss_pred CCCCHHHHHHHHCCHH--CCCCCCC
T ss_conf 8998788887603012--0567764
No 65
>KOG4284 consensus
Probab=97.87 E-value=7e-05 Score=46.55 Aligned_cols=112 Identities=14% Similarity=0.132 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHH
Q ss_conf 3433499998614899711057899999998765304----------778234899999972789869997214432332
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGL 123 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~Gl 123 (205)
.|+..|..++...+-...+|||.-..-.+.+...|.. ...-+.|..+++...+-.++||+.+- -.+-||
T Consensus 258 lklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTD-LtaRGI 336 (980)
T KOG4284 258 LKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTD-LTARGI 336 (980)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCEEEEEEECC-HHHCCC
T ss_conf 9999999998607267777654134210478877511698717741411235788999874201689998523-122267
Q ss_pred HHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 243206758972689998880225555766654202657753999998388
Q gi|254780130|r 124 NLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205)
Q Consensus 124 nL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205)
+-. .+|.||..|+|-+-+.|.-+|||- -|+|-..- .|. |++.+
T Consensus 337 Da~-~vNLVVNiD~p~d~eTY~HRIGRA-----gRFG~~G~-aVT-~~~~~ 379 (980)
T KOG4284 337 DAD-NVNLVVNIDAPADEETYFHRIGRA-----GRFGAHGA-AVT-LLEDE 379 (980)
T ss_pred CCC-CCCEEEECCCCCCHHHHHHHHHHC-----CCCCCCCE-EEE-EECCC
T ss_conf 865-553698358773067899884000-----01455650-688-86060
No 66
>KOG0342 consensus
Probab=97.84 E-value=0.00024 Score=43.55 Aligned_cols=122 Identities=19% Similarity=0.214 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHCCC-CCEEEHHHHHHH---HHH-HHH------HHHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 2343349999861489-971105789999---999-876------53047782348999999727898699972144323
Q gi|254780130|r 53 DEKIKALEVIIEKANA-APIIVAYHFNSD---LAR-LQK------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~-~kviVf~~f~~~---l~~-l~~------~~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
..++-.+..++.+.-+ .|+|||+.--.. ... |.+ .+.+..+-++|......|...+.-+|+|+ ..++-
T Consensus 314 ~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cT-DVaAR 392 (543)
T KOG0342 314 DSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCT-DVAAR 392 (543)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCHHHHHHHHCCCCEEEEC-CHHHC
T ss_conf 41179999999973477249999330267999999985068753244257853220238998861066439960-32213
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 3224320675897268999888022555576665420265775399999838895899999999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205)
|++.. ..+++|-|++|-+|..|.-++||-+ |-|-+-.- +-+++. +|..-++-|+
T Consensus 393 GlD~P-~V~~VvQ~~~P~d~~~YIHRvGRTa-----R~gk~G~a--lL~l~p--~El~Flr~LK 446 (543)
T KOG0342 393 GLDIP-DVDWVVQYDPPSDPEQYIHRVGRTA-----REGKEGKA--LLLLAP--WELGFLRYLK 446 (543)
T ss_pred CCCCC-CCEEEEEECCCCCHHHHHHHHCCCC-----CCCCCCEE--EEEECH--HHHHHHHHHH
T ss_conf 68888-8407998589999899898732122-----36898638--999676--6778999986
No 67
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=97.79 E-value=0.00014 Score=44.96 Aligned_cols=109 Identities=16% Similarity=0.179 Sum_probs=83.1
Q ss_pred CCCCEEEHHHHHHHHHHHHHHH-------------------------------------------HCCCCHHHHHHHHHH
Q ss_conf 8997110578999999987653-------------------------------------------047782348999999
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAF-------------------------------------------PQGRTLDKDPCTIQE 103 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~-------------------------------------------~~~~~~~~r~~~i~~ 103 (205)
.++..|||+|-+...|.+..++ .++...+.|..+.+.
T Consensus 243 ~hrsTLVF~NTR~~AErl~~~L~el~~erl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ia~aHHGSlSke~R~~vE~~ 322 (1490)
T PRK09751 243 RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQA 322 (1490)
T ss_pred HCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
T ss_conf 26876999788799999999999999987324643221100001112222112356654334455576899999999999
Q ss_pred HHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHH
Q ss_conf 727898699972144323322432067589726899988802255557666542026577539999983889589999
Q gi|254780130|r 104 WNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVL 181 (205)
Q Consensus 104 f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~ 181 (205)
+.+|+.+.++++ .|--.||+.- +-+.||.+..|-+-....|.+||=. |+.|......++-.-..+-+|-.+.
T Consensus 323 LK~G~LraVVaT-SSLELGIDiG-~VDlVVQvgsP~sVAs~lQRvGRAG----H~vg~~S~g~~~p~~r~dlle~av~ 394 (1490)
T PRK09751 323 LKSGELRCVVAT-SSLELGIDMG-AVDLVIQVATPLSVASGLQRIGRAG----HQVGGVSKGLFFPRTRRDLVDSAVI 394 (1490)
T ss_pred HHCCCCCEEEEC-CCHHHCCCCC-CCCEEEEECCCHHHHHHHHHHCCCC----CCCCCCCCEEEECCCHHHHHHHHHH
T ss_conf 867997789977-8054077644-6557998069667889999710125----7889844079962877899999999
No 68
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=97.79 E-value=0.0001 Score=45.69 Aligned_cols=126 Identities=20% Similarity=0.353 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHHH------CCC--CCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 2343349999861------489--971105789999999876530----------4778234899999972789869997
Q gi|254780130|r 53 DEKIKALEVIIEK------ANA--APIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFA 114 (205)
Q Consensus 53 ~~Kl~~l~~ii~~------~~~--~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~ 114 (205)
+.|.+.+..+.+. ..| -..|||++-+.--..|...+. .|.+..+|+.+.+.|.+++..+.+.
T Consensus 417 ~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVT 496 (830)
T COG1202 417 SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFAAQELAAVVT 496 (830)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 67778999999999754411376773699942166699999886107866654437986788888999976087555764
Q ss_pred CHHHHHHHHHHHHHCCEEEEECC-----CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC---------CCHHHHH
Q ss_conf 21443233224320675897268-----999888022555576665420265775399999838---------8958999
Q gi|254780130|r 115 HPASCGHGLNLQYGGNILVFFSL-----WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ---------NTIDELV 180 (205)
Q Consensus 115 ~~~a~g~GlnL~~a~~~vI~~~~-----~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~---------~tiEe~i 180 (205)
+ +|.|.|+++. |+.+||=++ |.||..|.|.-||- -|+|-...-.||-++-. +|=|+.-
T Consensus 497 T-AAL~AGVDFP--ASQVIFEsLaMG~~WLs~~EF~QM~GRA-----GRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA 568 (830)
T COG1202 497 T-AALAAGVDFP--ASQVIFESLAMGIEWLSVREFQQMLGRA-----GRPDYHDRGKVYLLVEPGKKYHASMEETEDEVA 568 (830)
T ss_pred H-HHHHCCCCCC--HHHHHHHHHHCCCCCCCHHHHHHHHCCC-----CCCCCCCCCEEEEEECCCHHHCCCCCCCHHHHH
T ss_conf 2-4564478875--1899999987104327899999985046-----998723373399995577011112135189999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780130|r 181 LQRLRT 186 (205)
Q Consensus 181 ~~~l~~ 186 (205)
++.|..
T Consensus 569 ~kLL~s 574 (830)
T COG1202 569 FKLLES 574 (830)
T ss_pred HHHHCC
T ss_conf 999607
No 69
>KOG0345 consensus
Probab=97.70 E-value=0.00025 Score=43.45 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHH----HHC--------CCCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 23433499998614899711057899999998765----304--------778234899999972789869997214432
Q gi|254780130|r 53 DEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKA----FPQ--------GRTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 53 ~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~----~~~--------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
..|+..+.+++.....+|+|||..--..++-..+. ++. -..-+.|....+.|.+....||+++ ..++
T Consensus 240 ~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~T-DVaA 318 (567)
T KOG0345 240 DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCT-DVAA 318 (567)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEEECCHHCCHHHHHHHHHHHHCCCCEEEEE-HHHH
T ss_conf 888999999996245462799934754099999888876078747986220123468899999871568618860-4555
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 33224320675897268999888022555576665420265775399
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205)
-||+.. .-+.||.||||-+|..+.-+-||-+ |-|..-.-.+
T Consensus 319 RGlDip-~iD~VvQ~DpP~~~~~FvHR~GRTa-----R~gr~G~Aiv 359 (567)
T KOG0345 319 RGLDIP-GIDLVVQFDPPKDPSSFVHRCGRTA-----RAGREGNAIV 359 (567)
T ss_pred CCCCCC-CCEEEEECCCCCCHHHHHHHCCHHH-----HCCCCCCEEE
T ss_conf 368988-9707997079998147777412144-----3567663489
No 70
>KOG0953 consensus
Probab=97.58 E-value=0.00058 Score=41.47 Aligned_cols=99 Identities=19% Similarity=0.208 Sum_probs=60.3
Q ss_pred CCCCEEEHHHHHH--HHHHHHHHH-------HCCCCHHHHHHHHHHHHC--CCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf 8997110578999--999987653-------047782348999999727--89869997214432332243206758972
Q gi|254780130|r 67 NAAPIIVAYHFNS--DLARLQKAF-------PQGRTLDKDPCTIQEWNE--GKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205)
Q Consensus 67 ~~~kviVf~~f~~--~l~~l~~~~-------~~~~~~~~r~~~i~~f~~--~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205)
+|.=|+-|+.-.= .-..|+++. -|+-+.+.|..-...||+ +++.|++++ .|-|+||||- -.++||+
T Consensus 357 ~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAs-DAIGMGLNL~--IrRiiF~ 433 (700)
T KOG0953 357 PGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVAS-DAIGMGLNLN--IRRIIFY 433 (700)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEEE-CCCCCCCCCC--EEEEEEE
T ss_conf 887699941114888899999855855489955899730688898737988762568862-3214554443--1179875
Q ss_pred CCC-CC--------HHHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEEC
Q ss_conf 689-99--------888022555576665420265775-399999838
Q gi|254780130|r 136 SLW-WD--------LEEHQQMIERIGVTRQRQAGFKRA-VFVYYLIAQ 173 (205)
Q Consensus 136 ~~~-~n--------~~~~~Qa~~Ri~~~r~hR~GQ~~~-v~v~~l~~~ 173 (205)
++. +| .....|--|| |-|+|-+-+ -.+..|-.+
T Consensus 434 sl~Kysg~e~~~it~sqikQIAGR-----AGRf~s~~~~G~vTtl~~e 476 (700)
T KOG0953 434 SLIKYSGRETEDITVSQIKQIAGR-----AGRFGSKYPQGEVTTLHSE 476 (700)
T ss_pred ECCCCCCCCCEECCHHHHHHHHHC-----CCCCCCCCCCCEEEEEEHH
T ss_conf 035677662102568999988510-----1544567767457774186
No 71
>KOG0347 consensus
Probab=97.50 E-value=0.00049 Score=41.88 Aligned_cols=120 Identities=13% Similarity=0.148 Sum_probs=82.7
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf 4899711057899999998765304778----------234899999972789869997214432332243206758972
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205)
.+|+ .+||||-.+.+.+|.-.|..-.. -..|-...++|.+...-||+++ ..|+-||+.+ ...|||||
T Consensus 462 yPGr-TlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaT-DVAARGLDIp-~V~HVIHY 538 (731)
T KOG0347 462 YPGR-TLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIAT-DVAARGLDIP-GVQHVIHY 538 (731)
T ss_pred CCCC-EEEEECHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEE-HHHHCCCCCC-CCCEEEEE
T ss_conf 6983-5998411889999999974169997102577889999876998744888179962-3444258887-86367896
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC---------------------CHHHHHHHHHHHHHHHHHHH
Q ss_conf 689998880225555766654202657753999998388---------------------95899999999999999999
Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN---------------------TIDELVLQRLRTKSTIQDLL 194 (205)
Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~---------------------tiEe~i~~~l~~K~~~~~~~ 194 (205)
-.|-+.+.|.-+-||-+ |.+- .-|.+. |+... .|++.++..++.+..++..+
T Consensus 539 qVPrtseiYVHRSGRTA-----RA~~-~Gvsvm-l~~P~e~~~~~KL~ktL~k~~dlpifPv~~~~m~~lkeRvrLA~ei 611 (731)
T KOG0347 539 QVPRTSEIYVHRSGRTA-----RANS-EGVSVM-LCGPQEVGPLKKLCKTLKKKEDLPIFPVETDIMDALKERVRLAREI 611 (731)
T ss_pred ECCCCCCEEEECCCCCC-----CCCC-CCEEEE-EECHHHHHHHHHHHHHHHHCCCCCCEECCHHHHHHHHHHHHHHHHH
T ss_conf 06875324676266532-----2567-883799-8681775789999998732367773002178999999999999988
Q ss_pred H
Q ss_conf 9
Q gi|254780130|r 195 L 195 (205)
Q Consensus 195 l 195 (205)
-
T Consensus 612 ~ 612 (731)
T KOG0347 612 D 612 (731)
T ss_pred H
T ss_conf 8
No 72
>KOG0339 consensus
Probab=97.46 E-value=0.00043 Score=42.20 Aligned_cols=116 Identities=17% Similarity=0.340 Sum_probs=85.4
Q ss_pred HHHHHHHHH-HHHHCCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 234334999-9861489971105789999999876530----------47782348999999727898699972144323
Q gi|254780130|r 53 DEKIKALEV-IIEKANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 53 ~~Kl~~l~~-ii~~~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
..|+.+|.. +.+....-+|++|..-+.+.+.|...|+ +..--..|.+.+.+|..+..+|++++ ..+..
T Consensus 452 ~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~Vlvat-Dvaar 530 (731)
T KOG0339 452 EKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVAT-DVAAR 530 (731)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHCCCCEEEEE-EHHHC
T ss_conf 78889999975501367847999942278999998732056325652274566777779998762477548884-07651
Q ss_pred HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH
Q ss_conf 32243206758972689998880225555766654202657753999998388958
Q gi|254780130|r 122 GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiE 177 (205)
|++.-. ..+||.||.--+-+.+.|.++|-. |-|-+- ..|.|+|+.-.+
T Consensus 531 gldI~~-ikTVvnyD~ardIdththrigrtg-----Rag~kG--vayTlvTeKDa~ 578 (731)
T KOG0339 531 GLDIPS-IKTVVNYDFARDIDTHTHRIGRTG-----RAGEKG--VAYTLVTEKDAE 578 (731)
T ss_pred CCCCCC-CCEEECCCCCCHHHHHHHHHHHCC-----CCCCCC--EEEEEECHHHHH
T ss_conf 787522-010234322210677887751023-----355565--136873355677
No 73
>KOG1513 consensus
Probab=97.39 E-value=0.0004 Score=42.38 Aligned_cols=83 Identities=14% Similarity=0.202 Sum_probs=66.0
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHCC--------EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEE
Q ss_conf 999727898699972144323322432067--------589726899988802255557666542026577539999983
Q gi|254780130|r 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGN--------ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIA 172 (205)
Q Consensus 101 i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~--------~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~ 172 (205)
-.+|.+|+-.|.+++. |++.||.||+ .. +-|-+++|||+..-.|--|| .||-.|.+.-.|..+|+
T Consensus 850 KqrFM~GeK~vAIISE-AaSSGISLQs-DrRv~NqRRRvHiTLELPWSADrAIQQFGR-----THRSNQVsaPEYVFlIs 922 (1300)
T KOG1513 850 KQRFMDGEKLVAIISE-AASSGISLQS-DRRVQNQRRRVHITLELPWSADRAIQQFGR-----THRSNQVSAPEYVFLIS 922 (1300)
T ss_pred HHHHCCCCCEEEEEEH-HHCCCCEEEC-CHHHHHHHHEEEEEEECCCCHHHHHHHHCC-----CCCCCCCCCCEEEEEEH
T ss_conf 7652366522454512-3316860202-155542012479999777315389998563-----32246567871799854
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 889589999999999999
Q gi|254780130|r 173 QNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 173 ~~tiEe~i~~~l~~K~~~ 190 (205)
+=.-|.+--..+.++++.
T Consensus 923 eLAGErRFAS~VAKRLES 940 (1300)
T KOG1513 923 ELAGERRFASIVAKRLES 940 (1300)
T ss_pred HHCCCHHHHHHHHHHHHH
T ss_conf 421324789999999876
No 74
>KOG0349 consensus
Probab=97.37 E-value=0.00026 Score=43.39 Aligned_cols=95 Identities=17% Similarity=0.288 Sum_probs=74.9
Q ss_pred HHHCCCCCEEEHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHC
Q ss_conf 861489971105789999999876530-------------4778234899999972789869997214432332243206
Q gi|254780130|r 63 IEKANAAPIIVAYHFNSDLARLQKAFP-------------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGG 129 (205)
Q Consensus 63 i~~~~~~kviVf~~f~~~l~~l~~~~~-------------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~ 129 (205)
+...+-.+.||||+-+.+-+.|+..+. +....++|+..++.|...+++.|+++ ..++-||+.| +-
T Consensus 500 i~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflict-dvaargldi~-g~ 577 (725)
T KOG0349 500 IRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICT-DVAARGLDIT-GL 577 (725)
T ss_pred HHHHCCCCEEEEEECCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEE-HHHHCCCCCC-CC
T ss_conf 555346745999703566167999998727864036888247882677887876652572799971-0443566542-77
Q ss_pred CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 75897268999888022555576665420265
Q gi|254780130|r 130 NILVFFSLWWDLEEHQQMIERIGVTRQRQAGF 161 (205)
Q Consensus 130 ~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205)
-.+|...+|-.-..|.-+++|+ +||-|.|-
T Consensus 578 p~~invtlpd~k~nyvhrigrv--graermgl 607 (725)
T KOG0349 578 PFMINVTLPDDKTNYVHRIGRV--GRAERMGL 607 (725)
T ss_pred CEEEEEECCCCCCHHHHHHHCC--CHHHHCCE
T ss_conf 2599985586541154564020--14544050
No 75
>KOG0352 consensus
Probab=97.21 E-value=0.0009 Score=40.42 Aligned_cols=93 Identities=19% Similarity=0.264 Sum_probs=71.4
Q ss_pred EEEHHHHHHHHHHHHH----------HHHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCC
Q ss_conf 1105789999999876----------530477823489999997278986999721443233224320675897268999
Q gi|254780130|r 71 IIVAYHFNSDLARLQK----------AFPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWD 140 (205)
Q Consensus 71 viVf~~f~~~l~~l~~----------~~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n 140 (205)
-||+|.-++..+.+.- ++..|....+|...-+.|.+++++|+.++ .+-|+|++=.. ..-||+.+++-|
T Consensus 258 GIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT-~SFGMGVDKp~-VRFViHW~~~qn 335 (641)
T KOG0352 258 GIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAAT-VSFGMGVDKPD-VRFVIHWSPSQN 335 (641)
T ss_pred EEEEECCHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEE-ECCCCCCCCCC-EEEEEECCHHHH
T ss_conf 2799602889998988753247626776500141126889999862788779996-02444668776-159995170565
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 888022555576665420265775399999
Q gi|254780130|r 141 LEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170 (205)
Q Consensus 141 ~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l 170 (205)
.+-|.|--|| |-|-|-..=|..||-
T Consensus 336 ~AgYYQESGR-----AGRDGk~SyCRLYYs 360 (641)
T KOG0352 336 LAGYYQESGR-----AGRDGKRSYCRLYYS 360 (641)
T ss_pred HHHHHHHCCC-----CCCCCCCCCEEEEEC
T ss_conf 7899886153-----566777252013332
No 76
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=97.08 E-value=0.0047 Score=36.44 Aligned_cols=123 Identities=19% Similarity=0.307 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHH------------HHHHHHHHHHCC--------CCHHHHHHHHHHHHCCCCC
Q ss_conf 2343349999861--48997110578999------------999987653047--------7823489999997278986
Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNS------------DLARLQKAFPQG--------RTLDKDPCTIQEWNEGKIP 110 (205)
Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~------------~l~~l~~~~~~~--------~~~~~r~~~i~~f~~~~~~ 110 (205)
..+.+.+.+.+.+ ..|..+.|-|...+ ..+.|++.|++. ...++.+.++++|.+|+++
T Consensus 450 ~~~~~~~~~~i~~~~~~g~q~y~v~p~ieese~~~~~~~~~~~~~l~~~~~~~~v~~~hG~m~~~ek~~~m~~F~~g~~~ 529 (677)
T PRK10917 450 DSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDLQSAEETYEELQKALPELRVGLLHGRMKPAEKDAVMAAFKAGEID 529 (677)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHCCCCC
T ss_conf 25689999999999975992899941311233201777999999998448997599830789878999999999839999
Q ss_pred EEEECHHHHHHHHHHHHHCCEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHH
Q ss_conf 999721443233224320675897268-999888022555576665420265775399999838895899999999
Q gi|254780130|r 111 LLFAHPASCGHGLNLQYGGNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLR 185 (205)
Q Consensus 111 Vll~~~~a~g~GlnL~~a~~~vI~~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~ 185 (205)
||++++ .--+|+|... |+++|..+. -|-.+..-|-.||+. |-+...-| +|++.+...+.-.++|.
T Consensus 530 iLvsTt-viEvGvdvpn-a~~mvi~~aerfGlsqLhQLRGRVg-----Rg~~~~~c---~l~~~~~~~~~~~~Rl~ 595 (677)
T PRK10917 530 ILVATT-VIEVGVDVPN-ATVMVIENAERFGLAQLHQLRGRVG-----RGAAQSYC---VLLYKDPLSETARERLK 595 (677)
T ss_pred EEEECC-EEECCCCCCC-CCEEEEECCCCCCHHHHHHHCCCCC-----CCCCCEEE---EEEECCCCCHHHHHHHH
T ss_conf 999898-9755867888-8589997701053678877427436-----78884589---99838999978999999
No 77
>KOG0353 consensus
Probab=97.03 E-value=0.00081 Score=40.66 Aligned_cols=104 Identities=21% Similarity=0.282 Sum_probs=74.6
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCC----------CHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 89971105789999999876530477----------82348999999727898699972144323322432067589726
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGR----------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~----------~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~ 136 (205)
.|..-||+|--..+-+.+.+++.... ....+..+-+.|-.++++|++++. |-|.||+-.. ...+|+-+
T Consensus 316 ~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~eiqvivatv-afgmgidkpd-vrfvihhs 393 (695)
T KOG0353 316 AGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATV-AFGMGIDKPD-VRFVIHHS 393 (695)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEE-EECCCCCCCC-EEEEEECC
T ss_conf 787656999534658999999985583522140556853445400033046068999986-4025678887-16999536
Q ss_pred CCCCHHHHHHHHHHH--------------------------------------HHHHHHCCCCCCCEEEEEEEE
Q ss_conf 899988802255557--------------------------------------666542026577539999983
Q gi|254780130|r 137 LWWDLEEHQQMIERI--------------------------------------GVTRQRQAGFKRAVFVYYLIA 172 (205)
Q Consensus 137 ~~~n~~~~~Qa~~Ri--------------------------------------~~~r~hR~GQ~~~v~v~~l~~ 172 (205)
+|-|-+.|.||-.|| ..+||-|-||+.+|..||=++
T Consensus 394 l~ksienyyqasarillrmtkqknksdtggstqinilevctnfkiffavfsekesgragrd~~~a~cilyy~~~ 467 (695)
T KOG0353 394 LPKSIENYYQASARILLRMTKQKNKSDTGGSTQINILEVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFA 467 (695)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHHCCCEEEEEEECCHHCCCCCCCCCCCCEEEEECHH
T ss_conf 61668999988789999876522555678753000433401310122220311025556688866479984247
No 78
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=96.99 E-value=0.0017 Score=38.86 Aligned_cols=94 Identities=17% Similarity=0.189 Sum_probs=67.7
Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHHHH----HHHHHHCC-------------CCHHHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 49999861489971105789999999----87653047-------------78234899999972789869997214432
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDLAR----LQKAFPQG-------------RTLDKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l~~----l~~~~~~~-------------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
.|++.+......|.|||+.-....+. |++.|... ...+.-+..++.|++.+.+.+.+|.....
T Consensus 690 ~l~~~~~~~~~gKTiIFA~~~~HAd~Iv~~l~e~F~~~y~~~~~~~~~~It~~~~~~~~lI~~Fkn~~~P~IAVTVDmL~ 769 (1126)
T PRK11448 690 ELAKYLDPTGEGKTLIFCVTDAHADMVVRLLKEAFKKKYGQVEDDAIIKITGDADKVQQLIRRFKNERLPNIVVTVDLLT 769 (1126)
T ss_pred HHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 99984588999876999278699999999999998864787678448997088844789999725789983899856210
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 33224320675897268999888022555576
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205)
.|++...-+| +||+-+--|...|+|.+||-.
T Consensus 770 TGiDVPei~n-LVF~R~V~S~i~F~QMiGRGT 800 (1126)
T PRK11448 770 TGIDVPSICN-LVFLRRVKSRILYEQMKGRAT 800 (1126)
T ss_pred CCCCCCCCEE-EEEEEECCCHHHHHHHHCCCC
T ss_conf 4766642016-887667566778665416755
No 79
>pfam11496 HDA2-3 Class II histone deacetylase complex subunits 2 and 3. This family of class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi, The member from S. pombe is referred to as Ccq1. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C-terminus.
Probab=96.82 E-value=0.0058 Score=35.94 Aligned_cols=147 Identities=13% Similarity=0.094 Sum_probs=83.4
Q ss_pred HHHHHHHHCCCCHHC-C----------CCCCCCCCCHHHHHHHHHHHHHC----CCCCEEEHHHHHHHHHHHHHHHHCCC
Q ss_conf 999998860770003-4----------45654205723433499998614----89971105789999999876530477
Q gi|254780130|r 28 KTVKCLQLANGAVYY-D----------EEKHWKEVHDEKIKALEVIIEKA----NAAPIIVAYHFNSDLARLQKAFPQGR 92 (205)
Q Consensus 28 ~~~kL~Ql~~g~~~~-d----------~~~~~~~~~~~Kl~~l~~ii~~~----~~~kviVf~~f~~~l~~l~~~~~~~~ 92 (205)
...+|.-+|+||-.. | +...+....|.|+..|.++++.. .+-+++|+++-..+++.++..+.|..
T Consensus 58 ~~~~l~~Va~HP~LlidH~~p~~l~~~~~~~~~~~tSgKF~~L~~Li~~~~~~~~~~~ilIv~~~~k~ldLlE~~llgk~ 137 (278)
T pfam11496 58 LFENLSNVATHPYLLIDHYMPKSLLLKEEAEHLAETSGKFLVLNDLINLLIPSERDLHVLIISRSGKTLDLVEALLLGKG 137 (278)
T ss_pred HHHHHHHHCCCCCHHHCCCCCCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCC
T ss_conf 99975554279326434557876644244789998233399999999998734578379999789537999999972586
Q ss_pred C---------HHHHHHHHHHHH-CCCCCEEEECHHHHH-----HHHHHHHHCCEEEEECCCCCHHH-HHHHHHHHHHHHH
Q ss_conf 8---------234899999972-789869997214432-----33224320675897268999888-0225555766654
Q gi|254780130|r 93 T---------LDKDPCTIQEWN-EGKIPLLFAHPASCG-----HGLNLQYGGNILVFFSLWWDLEE-HQQMIERIGVTRQ 156 (205)
Q Consensus 93 ~---------~~~r~~~i~~f~-~~~~~Vll~~~~a~g-----~GlnL~~a~~~vI~~~~~~n~~~-~~Qa~~Ri~~~r~ 156 (205)
. ............ ...+.+.+++.+ +- .+.+- ...+.+|-+|+.|++.. ..|.....
T Consensus 138 ~~y~r~~g~~~~~~~~~~~~~k~~~s~~I~l~~~~-~~~~~~~~~~~~-~~~d~Iia~D~s~d~~~p~ie~lR~~----- 210 (278)
T pfam11496 138 LKYKRLSGESLYEENHKVSDKKGSLSFWIHLTTSD-GLTNTDSSLLSN-YKFDLIISFDPSLDTSLPSIESLRTT----- 210 (278)
T ss_pred EEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCC-CCCCCCCCCCCC-CCCCEEEEECCCCCCCCHHHHHHHHH-----
T ss_conf 46760788767665545655578840699970687-754578884435-65277999568879897489999863-----
Q ss_pred HCCCCCCCEEEEEEEECCCHHHHHHHH
Q ss_conf 202657753999998388958999999
Q gi|254780130|r 157 RQAGFKRAVFVYYLIAQNTIDELVLQR 183 (205)
Q Consensus 157 hR~GQ~~~v~v~~l~~~~tiEe~i~~~ 183 (205)
+|.| +.+=+++++..+|+|--.+..
T Consensus 211 ~~~~--~~~PvirLv~~nSiEHi~l~~ 235 (278)
T pfam11496 211 NRRG--RLTPIIRLVVVNSIEHIELCF 235 (278)
T ss_pred CCCC--CCCCEEEEEECCCHHHHHHHC
T ss_conf 4489--988779995269999999875
No 80
>KOG0952 consensus
Probab=96.59 E-value=0.012 Score=34.11 Aligned_cols=116 Identities=16% Similarity=0.239 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH--------------------------HCC-------CCHHHHHHH
Q ss_conf 34334999986148997110578999999987653--------------------------047-------782348999
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF--------------------------PQG-------RTLDKDPCT 100 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~--------------------------~~~-------~~~~~r~~~ 100 (205)
.+++++.+.+. +|..|+||++-+...-...+.| ..| ....-|.-.
T Consensus 337 ~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~ 414 (1230)
T KOG0952 337 VCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLV 414 (1230)
T ss_pred HHHHHHHHHHH--CCCEEEEEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 89999999997--4985999996574899999999999886286565678836678999987401020256431468999
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHH----------HHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 999727898699972144323322432067589726899988----------8022555576665420265775399999
Q gi|254780130|r 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLE----------EHQQMIERIGVTRQRQAGFKRAVFVYYL 170 (205)
Q Consensus 101 i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~----------~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l 170 (205)
...|..|.++|+.+++. -+-|.||. |-.++|.=.+.|++. +-.|-.|| |-|++-...-..+-+
T Consensus 415 E~~F~~G~i~vL~cTaT-LAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGR-----AGRPqFd~~G~giIi 487 (1230)
T KOG0952 415 EKEFKEGHIKVLCCTAT-LAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGR-----AGRPQFDSSGEGIII 487 (1230)
T ss_pred HHHHHCCCCEEEEECCE-EEECCCCC-CEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHC-----CCCCCCCCCCEEEEE
T ss_conf 99985598228996121-33125776-418986487411356684354028888998720-----689987777628999
Q ss_pred EECCCHHH
Q ss_conf 83889589
Q gi|254780130|r 171 IAQNTIDE 178 (205)
Q Consensus 171 ~~~~tiEe 178 (205)
-+.+.++-
T Consensus 488 Tt~dkl~~ 495 (1230)
T KOG0952 488 TTRDKLDH 495 (1230)
T ss_pred ECCCHHHH
T ss_conf 66507989
No 81
>COG1204 Superfamily II helicase [General function prediction only]
Probab=96.48 E-value=0.011 Score=34.42 Aligned_cols=80 Identities=18% Similarity=0.279 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE----EEC-----CCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 348999999727898699972144323322432067589----726-----89998880225555766654202657753
Q gi|254780130|r 95 DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV----FFS-----LWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205)
Q Consensus 95 ~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI----~~~-----~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205)
..|.-+.+.|.+|.++|+++++. -+.|+||. |-.++| .|+ .+-+..++.|..|| |-|+|=.. +
T Consensus 327 ~~R~~vE~~Fr~g~ikVlv~TpT-LA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GR-----AGRPg~d~-~ 398 (766)
T COG1204 327 EDRQLVEDAFRKGKIKVLVSTPT-LAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGR-----AGRPGYDD-Y 398 (766)
T ss_pred HHHHHHHHHHHCCCCEEEEECHH-HHHHCCCC-CEEEEEEEEEEECCCCCEEECCHHHHHHCCCC-----CCCCCCCC-C
T ss_conf 89999999986698549995457-76216886-32899910387757788477764148655676-----79987577-7
Q ss_pred EEEEEEECCCHHHHHHH
Q ss_conf 99999838895899999
Q gi|254780130|r 166 FVYYLIAQNTIDELVLQ 182 (205)
Q Consensus 166 ~v~~l~~~~tiEe~i~~ 182 (205)
-.-.+++.++-+...+.
T Consensus 399 G~~~i~~~~~~~~~~~~ 415 (766)
T COG1204 399 GEAIILATSHDELEYLA 415 (766)
T ss_pred CCEEEEECCCCCHHHHH
T ss_conf 82799935863155899
No 82
>TIGR01587 cas3_core CRISPR-associated helicase Cas3; InterPro: IPR006474 This entry represents a highly conserved core region of the Cas3 sequences. The proteins are found in association with CRISPR repeat elements in a broad range of bacteria and Archaea . Cas3 appears to be a helicase, containing a DEAD/DEAH box region and conserved C-terminal domain. Some but not all members have an N-terminal HD domain region (IPR006674 from INTERPRO), these sequences are not included within this group..
Probab=96.10 E-value=0.017 Score=33.34 Aligned_cols=116 Identities=12% Similarity=0.246 Sum_probs=69.1
Q ss_pred HHHHHHHHH-HHHC-CCCCEEEHHHHHHHHHHHHHHHHCC-----------------CCHHHH--HHHHHHHHC-----C
Q ss_conf 343349999-8614-8997110578999999987653047-----------------782348--999999727-----8
Q gi|254780130|r 54 EKIKALEVI-IEKA-NAAPIIVAYHFNSDLARLQKAFPQG-----------------RTLDKD--PCTIQEWNE-----G 107 (205)
Q Consensus 54 ~Kl~~l~~i-i~~~-~~~kviVf~~f~~~l~~l~~~~~~~-----------------~~~~~r--~~~i~~f~~-----~ 107 (205)
..+..+.++ ++.. .+.+++|++|-......+-..+.+. .-..+- ...+..|.+ .
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~ii~NtV~~A~~~Y~~~kE~~p~~~~~~L~HsRF~~~DR~~KEde~~~l~e~~~S~~~~~ 332 (424)
T TIGR01587 253 GEISSLERLLLEELKKGGKVLIIVNTVDRAQEFYQKLKEKAPELEEVILLHSRFTEKDRAKKEDEAELLKELKKSAWKDN 332 (424)
T ss_pred CCHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 31346666778741577866999854389999999985126520021244044770036677679999998510135445
Q ss_pred CCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCC
Q ss_conf 98699972144323322432067589726899988802255557666542026--577539999983889
Q gi|254780130|r 108 KIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQNT 175 (205)
Q Consensus 108 ~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~G--Q~~~v~v~~l~~~~t 175 (205)
+..|+|+| |++-.|||+ + ++.+| -++ =-+....|+.||+.|+.. ++| ...+|+|++....+.
T Consensus 333 ~~~v~V~T-Qv~E~SlD~-s-~D~~i-Te~-aP~d~LiQR~GR~~R~~~-~~~d~~~~~~y~~~~~~~~~ 396 (424)
T TIGR01587 333 EKFVIVAT-QVIEVSLDI-S-VDVMI-TEL-APIDSLIQRLGRLNRYGR-KIGDIENREVYILTILLEDK 396 (424)
T ss_pred CCEEEEEE-EEEEEEEEC-C-CCHHH-HHC-CCHHHHHHHHHHHCCCCC-CCCCCCCCCEEEEEECCCCC
T ss_conf 77069987-878886420-4-44134-311-501233554211101135-65788987203785257888
No 83
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.082 Score=29.56 Aligned_cols=111 Identities=17% Similarity=0.316 Sum_probs=73.5
Q ss_pred HHH-HHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHH----HCC------CCHHHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 433-499998614--8997110578999999987653----047------782348999999727898699972144323
Q gi|254780130|r 55 KIK-ALEVIIEKA--NAAPIIVAYHFNSDLARLQKAF----PQG------RTLDKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 55 Kl~-~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~----~~~------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
|+. .|..+++.. .|.+++||..-...++.....| +.. +...-|.+.++.|++|+..+|+.++ -.--
T Consensus 289 kl~~kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTTT-ILER 367 (441)
T COG4098 289 KLPLKLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQHRKEKVEAFRDGKITLLITTT-ILER 367 (441)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEEEE-HHHC
T ss_conf 477899999999874388289992505889999999986188642156533670178999998758638999844-0332
Q ss_pred HHHHHHHCCEEEEECCC--CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
Q ss_conf 32243206758972689--99888022555576665420265775399999
Q gi|254780130|r 122 GLNLQYGGNILVFFSLW--WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYL 170 (205)
Q Consensus 122 GlnL~~a~~~vI~~~~~--~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l 170 (205)
|++... -++.|+=+.. |+-+...|--||+. |.++. .+.+|..+|.
T Consensus 368 GVTfp~-vdV~Vlgaeh~vfTesaLVQIaGRvG--Rs~~~-PtGdv~FFH~ 414 (441)
T COG4098 368 GVTFPN-VDVFVLGAEHRVFTESALVQIAGRVG--RSLER-PTGDVLFFHY 414 (441)
T ss_pred CCCCCC-CEEEEECCCCCCCCHHHHHHHHHHCC--CCCCC-CCCCEEEEEC
T ss_conf 664356-23999547764201889999752316--78768-9875899964
No 84
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=95.80 E-value=0.1 Score=29.09 Aligned_cols=120 Identities=13% Similarity=0.219 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHH----HHH--------------HCCCCHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 433499998614--8997110578999999987----653--------------04778234899999972789869997
Q gi|254780130|r 55 KIKALEVIIEKA--NAAPIIVAYHFNSDLARLQ----KAF--------------PQGRTLDKDPCTIQEWNEGKIPLLFA 114 (205)
Q Consensus 55 Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~----~~~--------------~~~~~~~~r~~~i~~f~~~~~~Vll~ 114 (205)
+...+..++... +|-+.++|+......+.+. .++ .++.....|..+...|.+++..+++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~s 370 (851)
T COG1205 291 ALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIA 370 (851)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCHHHHEEECCCCCCHHHHHHHHHHHHCCCCCEEEE
T ss_conf 57799999999987696599998357567887541578875406010331342336699999999999974688417861
Q ss_pred CHHHHHHHHHHHHHCCEEEEECCCC-CHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHH
Q ss_conf 2144323322432067589726899-98880225555766654202657753999998388958999999
Q gi|254780130|r 115 HPASCGHGLNLQYGGNILVFFSLWW-DLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQR 183 (205)
Q Consensus 115 ~~~a~g~GlnL~~a~~~vI~~~~~~-n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~ 183 (205)
+ .|.-.|++.. .-..+|.+..|- +...+.|..||. -|.||. ..++...-.+.+|......
T Consensus 371 t-~AlelgidiG-~ldavi~~g~P~~s~~~~~Q~~GRa-----GR~~~~--~l~~~v~~~~~~d~yy~~~ 431 (851)
T COG1205 371 T-NALELGIDIG-SLDAVIAYGYPGVSVLSFRQRAGRA-----GRRGQE--SLVLVVLRSDPLDSYYLRH 431 (851)
T ss_pred C-HHHCCCEEEC-CEEEEEECCCCCCHHHHHHHHHCCC-----CCCCCC--CEEEEEECCCCCCHHHHHC
T ss_conf 2-1012265670-2114530488970288898861103-----588787--5379983788400445508
No 85
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype; InterPro: IPR013444 This entry represents a CRISPR-associated putative DEAH-box helicase, or Cas3, subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. The proteins include both DEAH and HD motifs..
Probab=95.60 E-value=0.008 Score=35.17 Aligned_cols=94 Identities=14% Similarity=0.139 Sum_probs=65.8
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCCCC----------------HHHHHHHHHHHHCC---------C-CCEEEECHHHH
Q ss_conf 4899711057899999998765304778----------------23489999997278---------9-86999721443
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQGRT----------------LDKDPCTIQEWNEG---------K-IPLLFAHPASC 119 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~----------------~~~r~~~i~~f~~~---------~-~~Vll~~~~a~ 119 (205)
..|+-++||++-..++..+-..|++... .-++..++.+|-.+ + -.|+|+.+.++
T Consensus 309 s~g~~~~Vf~~~~~~v~~v~a~L~k~~~~~~~ltG~vr~~~~d~lar~~~~~~~~Lpp~~~~s~g~~~~g~~~vVaTst~ 388 (975)
T TIGR02621 309 SSGEAILVFCNTVDEVKKVVAKLPKEARRLEDLTGTVRGLERDMLARRGEIFNRFLPPYRSGSEGRPQQGTVYVVATSTG 388 (975)
T ss_pred CCCCEEEEEECCCCHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCCCEEEEEECCE
T ss_conf 27866999876843068988645774540776288104334785200131453148764567736689987799973242
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 2332243206758972689998880225555766654202657753999
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
-+|.|| .+ +++| .+. =..+.+.|+-||+. |+|...+|.|.
T Consensus 389 EVGadl-df-dhLv-t~~-~~~~sl~QRfGRvn-----R~G~r~~~~~~ 428 (975)
T TIGR02621 389 EVGADL-DF-DHLV-TDL-APFESLVQRFGRVN-----RFGERLDGSIA 428 (975)
T ss_pred EECCCC-CC-CHHH-HCC-CHHHHHHHHHHHHC-----CCCCCCCCEEE
T ss_conf 550344-31-1122-114-42457865430020-----00223165058
No 86
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=95.17 E-value=0.03 Score=32.01 Aligned_cols=99 Identities=25% Similarity=0.456 Sum_probs=68.8
Q ss_pred CHHH---HHHHHHHHHH--CCCCCEEEHHHHHHHHHHH-------------HHHH-H--------CCCCHHHHHHHHHHH
Q ss_conf 7234---3349999861--4899711057899999998-------------7653-0--------477823489999997
Q gi|254780130|r 52 HDEK---IKALEVIIEK--ANAAPIIVAYHFNSDLARL-------------QKAF-P--------QGRTLDKDPCTIQEW 104 (205)
Q Consensus 52 ~~~K---l~~l~~ii~~--~~~~kviVf~~f~~~l~~l-------------~~~~-~--------~~~~~~~r~~~i~~f 104 (205)
++.+ ++.+.+.+++ ..|++|.|=|...++=|.| .+.| + +-...++.+.+...|
T Consensus 507 ~~~~~aW~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlHGrm~~~eK~~vm~~F 586 (721)
T TIGR00643 507 HKEKGAWIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLHGRMKSDEKEAVMEEF 586 (721)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHH
T ss_conf 27887756899999999983289089996440320047168999999999888612210011330689847899999985
Q ss_pred HCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC-CCCHHHHHHHHHHHH
Q ss_conf 278986999721443233224320675897268-999888022555576
Q gi|254780130|r 105 NEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL-WWDLEEHQQMIERIG 152 (205)
Q Consensus 105 ~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~-~~n~~~~~Qa~~Ri~ 152 (205)
.++++.|||+| ..-=+|+|+.. |+++|.+++ =|=.+..-|=.||+.
T Consensus 587 ~~~~~~ILVsT-TVIEVGVDVPn-AtvMVIe~AeRFGLSQLHQLRGRVG 633 (721)
T TIGR00643 587 REGEVDILVST-TVIEVGVDVPN-ATVMVIEDAERFGLSQLHQLRGRVG 633 (721)
T ss_pred HHCCCEEEEEE-EEEEEEEECCC-CCEEEEECCCHHHHHHHHHHCEEEC
T ss_conf 21583699997-68999861797-7278886655103688876350012
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=94.97 E-value=0.25 Score=26.86 Aligned_cols=110 Identities=21% Similarity=0.214 Sum_probs=72.1
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCC-CCCEEEECHHHHH
Q ss_conf 72343349999861--4899711057899999998765304778----2----3489999997278-9869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEG-KIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~-~~~Vll~~~~a~g 120 (205)
...|++++.+-+.+ ..|+||+|-+...+.=+.|...|..... . ..++..|=. +.| .-.|.+++ ..||
T Consensus 550 ~~~K~~Avi~eI~~~h~~GqPVLVGT~SVe~SE~lS~~L~~~gI~H~VLNAK~h~~EAeIIA-~AG~~GaVTIAT-NMAG 627 (969)
T PRK12899 550 EREKYHAIVNEIASIHRSGNPILIGTESVEVSEKLSRILRQNRIEHTVLNAKNHAQEAEIIA-GAGKLGAVTVAT-NMAG 627 (969)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHHH-HCCCCCCEEEEC-CCCC
T ss_conf 99999999999999995799889983857999999999998699645415111789999999-559999779713-2678
Q ss_pred HHHHH-------HHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 33224-------3206758972689998880225555766654202657753999
Q gi|254780130|r 121 HGLNL-------QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 121 ~GlnL-------~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
-|.+. ..+.=+||=-++.-| -++||+-|+||-|=|-.-....|
T Consensus 628 RGTDIkL~~~V~~lGGLhVIGTERHES-----RRIDnQLRGRaGRQGDPGsS~F~ 677 (969)
T PRK12899 628 RGTDIKLDEEAVAVGGLHVIGTSRHQS-----RRIDRQLRGRCARLGDPGAAKFF 677 (969)
T ss_pred CCCCCCCCCCHHHCCCEEEEECCCCHH-----HHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 985831381334338727852143401-----45776760331347899853267
No 88
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=94.59 E-value=0.32 Score=26.30 Aligned_cols=110 Identities=19% Similarity=0.215 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCC-CCCEEEECHHHHH
Q ss_conf 72343349999861--4899711057899999998765304778----2----3489999997278-9869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEG-KIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~-~~~Vll~~~~a~g 120 (205)
...|..++.+-+.+ ..|+||+|-+...+.-+.|...|..... . ..++..+=.. .| .-.|.+++ ..||
T Consensus 422 ~~~K~~Ai~~ei~~~~~~gqPvLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk~~~~EA~IIa~-AG~~GaVTIAT-NMAG 499 (823)
T PRK12906 422 LDSKFNAVVDDIKERHAKGQPVLVGTVSIESSERLSQLLDKAGIPHAVLNAKNHAKEAEIIAQ-AGQRGAVTIAT-NMAG 499 (823)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHH-CCCCCEEEEEC-CCCC
T ss_conf 999999999999999867998899717589999999999976870353068775789999983-48999389706-5568
Q ss_pred HHHHHHHHC------------------------------------CEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 332243206------------------------------------75897268999888022555576665420265775
Q gi|254780130|r 121 HGLNLQYGG------------------------------------NILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164 (205)
Q Consensus 121 ~GlnL~~a~------------------------------------~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~ 164 (205)
-|.+..-+. =+||--++.-| -++||+.|+||-|=|..-.
T Consensus 500 RGTDI~LGg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTErheS-----rRIDnQLrGRaGRQGDPGs 574 (823)
T PRK12906 500 RGTDIKLGGNPFEDIEAYQEAWIRELPKMKQRCEERRDKVRELGGLAVIGTERHES-----RRIDNQLRGRSGRQGDPGS 574 (823)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHCCCCCCCCCCC
T ss_conf 98796308973021343322246678888887765568999738937985044402-----5678787232134799985
Q ss_pred EEEE
Q ss_conf 3999
Q gi|254780130|r 165 VFVY 168 (205)
Q Consensus 165 v~v~ 168 (205)
...|
T Consensus 575 s~F~ 578 (823)
T PRK12906 575 TRFY 578 (823)
T ss_pred CEEE
T ss_conf 2376
No 89
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=94.52 E-value=0.054 Score=30.57 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=67.3
Q ss_pred HHHHHHHHC-CC---CCEEEHHHHHHHHHHHHHHH----HCCCC---------HHHHHHHHHHHH-CCCCCEEEECHHHH
Q ss_conf 499998614-89---97110578999999987653----04778---------234899999972-78986999721443
Q gi|254780130|r 58 ALEVIIEKA-NA---APIIVAYHFNSDLARLQKAF----PQGRT---------LDKDPCTIQEWN-EGKIPLLFAHPASC 119 (205)
Q Consensus 58 ~l~~ii~~~-~~---~kviVf~~f~~~l~~l~~~~----~~~~~---------~~~r~~~i~~f~-~~~~~Vll~~~~a~ 119 (205)
.+.+.++.. .| .|.||||.-....+.+..+| ++... .++-+..++.|. +...+.+.++..-.
T Consensus 412 ~~~e~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q~~Id~f~~ke~~P~IaitvdlL 491 (875)
T COG4096 412 ELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQALIDNFIDKEKYPRIAITVDLL 491 (875)
T ss_pred HHHHHHCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCEEEEHHHH
T ss_conf 99998425668886684589962707899999999874801067459998444065689999887437898358761245
Q ss_pred HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHH
Q ss_conf 2332243206758972689998880225555766
Q gi|254780130|r 120 GHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGV 153 (205)
Q Consensus 120 g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~ 153 (205)
..|++....+| +||+.+-.|-..|+|.+||-.|
T Consensus 492 ~TGiDvpev~n-lVF~r~V~SktkF~QMvGRGTR 524 (875)
T COG4096 492 TTGVDVPEVVN-LVFDRKVRSKTKFKQMVGRGTR 524 (875)
T ss_pred HCCCCCHHEEE-EEEHHHHHHHHHHHHHHCCCCC
T ss_conf 42787622045-6431444668999998667654
No 90
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=94.06 E-value=0.42 Score=25.66 Aligned_cols=111 Identities=15% Similarity=0.143 Sum_probs=72.6
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861--48997110578999999987653047782--------348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~~--------~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|..++.+-+.+ ..|+||+|-+.-.+.-+.|...|...... ..++..+=..--....|.+++ ..||-
T Consensus 408 ~~~k~~av~~ei~~~~~~gqPvLvgt~sve~Se~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG~~g~VTiAT-NMAGR 486 (885)
T PRK12903 408 KHAKWKAVVKEVKRVHEKGQPILIGTAQVEDSEQLHEYLLEANIPHTVLNAKQHAREAEIIAKAGQKGAITIAT-NMAGR 486 (885)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHCCCCCCEEEEC-CCCCC
T ss_conf 99999999999999985799889956847999999999985687703554686588999999548999189837-66789
Q ss_pred HHHH-------HHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 3224-------3206758972689998880225555766654202657753999
Q gi|254780130|r 122 GLNL-------QYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 122 GlnL-------~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
|.+. ..+.=+||--++.-| -++||+.|+||-|=|..-....|
T Consensus 487 GTDI~Lg~~v~~~GGL~Vigterhes-----rRiD~QLrGR~gRQGDpG~s~f~ 535 (885)
T PRK12903 487 GTDIKLSKGVLELGGLYVLGTEKAES-----RRIDNQLRGRSGRQGDVGESRFF 535 (885)
T ss_pred CCCCCCCHHHHHCCCEEEEECCCCCC-----HHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 96857416589729858984265620-----45888860743468999735999
No 91
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=93.89 E-value=0.45 Score=25.47 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 72343349999861--4899711057899999998765304778----2----348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|++++.+-+.+ ..|+||+|-+...+.=+.|...|..... . ..++..|=..---.-.|.+++- .||-
T Consensus 536 ~~~K~~Aii~ei~~~~~~gqPVLVGT~SVe~SE~lS~~L~~~gI~h~VLNAk~h~~EA~IIa~AG~~GaVTIATN-MAGR 614 (983)
T PRK12900 536 RREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIEHNVLNAKQNEREAEIVAEAGQKGAVTIATN-MAGR 614 (983)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEECC-CCCC
T ss_conf 999999999999999747998899838789999999999985995565167847889999993699997798243-6789
Q ss_pred HHHHHH-------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 322432-------06758972689998880225555766654202657753999
Q gi|254780130|r 122 GLNLQY-------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 122 GlnL~~-------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
|.+..- +.=+||=-++.-| -++||+-|+||-|=|-.-....|
T Consensus 615 GTDIkLg~~V~elGGL~VIgTErheS-----rRIDnQLrGRaGRQGDPG~S~F~ 663 (983)
T PRK12900 615 GTDIKLGEGVRELGGLFILGSERHES-----RRIDRQLRGRAGRQGDPGESVFY 663 (983)
T ss_pred CCCCCCCCCHHHCCCEEEEECCCCHH-----HHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 85825483446538807751142302-----56787860432457999853999
No 92
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=93.88 E-value=0.45 Score=25.46 Aligned_cols=110 Identities=15% Similarity=0.183 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----HH----HHHHHHHHHHCCC-CCEEEECHHHHH
Q ss_conf 72343349999861--4899711057899999998765304778----23----4899999972789-869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----LD----KDPCTIQEWNEGK-IPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~----~r~~~i~~f~~~~-~~Vll~~~~a~g 120 (205)
...|..++.+-+.+ ..|+||+|-+...+.-+.|...|..... .+ .++..+=. +.|. -.|.+++ ..||
T Consensus 414 ~~~k~~av~~~v~~~~~~g~pvLvgt~sv~~Se~~s~~L~~~~i~h~vLnAk~~~~Ea~Iia-~AG~~g~vTiaT-nMAG 491 (799)
T PRK09200 414 VDEKYKAVIEEVKERHETGRPVLIGTGSIEQSEYFSKLLFEAGIPHNLLNAKNAAQEAQIIA-EAGQKGAVTVAT-NMAG 491 (799)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHH-HCCCCCEEEEEC-CCCC
T ss_conf 99999999999999985799889983857999999999986576433205321778999998-278999489845-4558
Q ss_pred HHHHHH-------HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 332243-------206758972689998880225555766654202657753999
Q gi|254780130|r 121 HGLNLQ-------YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 121 ~GlnL~-------~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
-|.+.. .+.=+||--+++-| -++||+.|+||-|=|..-....|
T Consensus 492 RGtDI~l~~~v~~~GGL~Vigterhes-----~Rid~QlrGR~gRQGdpG~s~f~ 541 (799)
T PRK09200 492 RGTDIKLGEGVHELGGLAVIGTERMES-----RRVDLQLRGRSGRQGDPGSSQFF 541 (799)
T ss_pred CCCCCCCCCCHHHCCCEEEEECCCCCH-----HHHHHHHCCCCCCCCCCCCEEEE
T ss_conf 986953384535438817740344514-----66776751653457999854899
No 93
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=93.86 E-value=0.46 Score=25.44 Aligned_cols=114 Identities=17% Similarity=0.140 Sum_probs=73.0
Q ss_pred CCCCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHH
Q ss_conf 20572343349999861--4899711057899999998765304778----2----348999999727898699972144
Q gi|254780130|r 49 KEVHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPAS 118 (205)
Q Consensus 49 ~~~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a 118 (205)
......|++++.+-+.+ ..|+||+|-+...+.=+.|...|..... . ..++..|=..--..-.|.+++- .
T Consensus 428 y~t~~~K~~Av~~ei~~~~~~gqPVLvGT~Sve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~Iia~AG~~gaVTIATN-M 506 (913)
T PRK13103 428 YLTAEEKYAAIITDIKECMALGRPVLVGTATIETSEHMSNLLKKEGIEHKVLNAKYHEKEAEIIAQAGAPGALTIATN-M 506 (913)
T ss_pred ECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHCCCCCCEEEECC-C
T ss_conf 838999999999999999974998899627468899999999976997512048873799999983378997897164-5
Q ss_pred HHHHHHHHHH------------------------------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 3233224320------------------------------------6758972689998880225555766654202657
Q gi|254780130|r 119 CGHGLNLQYG------------------------------------GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162 (205)
Q Consensus 119 ~g~GlnL~~a------------------------------------~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205)
||-|.+..-+ .=+||=-++.-| -++||+.|+||-|=|-.
T Consensus 507 AGRGTDI~LGgn~e~~~~~~~~~~~e~~~~~~~~~~~~~~~V~~~GGL~VIgterheS-----rRiDnQLrGRsGRQGDP 581 (913)
T PRK13103 507 AGRGTDILLGGNWEVEVAALENPTPEQIAQIKADWQKRHQQVIEAGGLHVIASERHES-----RRIDNQLRGRAGRQGDP 581 (913)
T ss_pred CCCCCCEECCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCC-----HHHHHHHCCCCCCCCCC
T ss_conf 6898695268860344431036767789999999998877898629849996165521-----25787860743568999
Q ss_pred CCEEEE
Q ss_conf 753999
Q gi|254780130|r 163 RAVFVY 168 (205)
Q Consensus 163 ~~v~v~ 168 (205)
-....|
T Consensus 582 G~s~F~ 587 (913)
T PRK13103 582 GSSRFY 587 (913)
T ss_pred CCCEEE
T ss_conf 865489
No 94
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=93.79 E-value=0.16 Score=28.04 Aligned_cols=107 Identities=15% Similarity=0.262 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHH------------HHHHHHHC--------CCCHHHHHHHHHHHHCCCCC
Q ss_conf 2343349999861--48997110578999999------------98765304--------77823489999997278986
Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLA------------RLQKAFPQ--------GRTLDKDPCTIQEWNEGKIP 110 (205)
Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~------------~l~~~~~~--------~~~~~~r~~~i~~f~~~~~~ 110 (205)
..+.+.+.+.+.+ ..|+.+.|-|...++-+ .|...|++ -...++.+.+...|.+++.+
T Consensus 456 ~~~~~~v~e~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ 535 (677)
T COG1200 456 HERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEID 535 (677)
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCC
T ss_conf 44479999999999974997999952535433113654999999999870546367775689867799999999808876
Q ss_pred EEEECHHHHHHHHHHHHHCCEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 999721443233224320675897268-99988802255557666542026577539
Q gi|254780130|r 111 LLFAHPASCGHGLNLQYGGNILVFFSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVF 166 (205)
Q Consensus 111 Vll~~~~a~g~GlnL~~a~~~vI~~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~ 166 (205)
+|++++ .--+|+|... |+.+|..+. -|-.+..-|-.||+ -|-+...-|.
T Consensus 536 ILVaTT-VIEVGVdVPn-ATvMVIe~AERFGLaQLHQLRGRV-----GRG~~qSyC~ 585 (677)
T COG1200 536 ILVATT-VIEVGVDVPN-ATVMVIENAERFGLAQLHQLRGRV-----GRGDLQSYCV 585 (677)
T ss_pred EEEEEE-EEEECCCCCC-CEEEEEECHHHHHHHHHHHHCCCC-----CCCCCCEEEE
T ss_conf 899813-8995235788-707999654330378888752655-----7887544899
No 95
>KOG0949 consensus
Probab=93.70 E-value=0.33 Score=26.26 Aligned_cols=81 Identities=23% Similarity=0.295 Sum_probs=60.2
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE--CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 899999972789869997214432332243206758972--689998880225555766654202657753999998388
Q gi|254780130|r 97 DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF--SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205)
Q Consensus 97 r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~--~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205)
|....--|+.|...|++++ ...+.|+|+. |.+|+|. ++-.+|..|.|+-|| |-|.|-..--+|..+ |
T Consensus 977 R~~VEvLFR~g~L~VlfaT-~TLsLGiNMP--CrTVvF~gDsLQL~plny~QmaGR-----AGRRGFD~lGnV~Fm---g 1045 (1330)
T KOG0949 977 RSLVEVLFRQGHLQVLFAT-ETLSLGINMP--CRTVVFAGDSLQLDPLNYKQMAGR-----AGRRGFDTLGNVVFM---G 1045 (1330)
T ss_pred HHHHHHHHHCCCEEEEEEE-EEHHCCCCCC--CEEEEEECCCCCCCCHHHHHHHCC-----CCCCCCCCCCCEEEE---E
T ss_conf 8799998644856899982-1101126887--416897035221371457766240-----334455555655887---2
Q ss_pred CHHHHHHHHHHHHH
Q ss_conf 95899999999999
Q gi|254780130|r 175 TIDELVLQRLRTKS 188 (205)
Q Consensus 175 tiEe~i~~~l~~K~ 188 (205)
-=-.+|++.+..+.
T Consensus 1046 iP~~kv~rLlts~L 1059 (1330)
T KOG0949 1046 IPRQKVQRLLTSLL 1059 (1330)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 75999999998751
No 96
>TIGR00596 rad1 DNA repair protein (rad1); InterPro: IPR006167 All proteins in this family, for which functions are known, are components in a multiprotein endonuclease complex, usually made up of Rad1 and Rad10 homologues. This complex is used primarily for nucleotide excision repair but also for some aspects of recombinational repair in some species. Most Archaeal species also have homologues of these genes, but the function of the Archaeal proteins is not known, so are not included in this family.; GO: 0003676 nucleic acid binding, 0004519 endonuclease activity, 0006281 DNA repair.
Probab=93.49 E-value=0.14 Score=28.23 Aligned_cols=81 Identities=14% Similarity=0.183 Sum_probs=58.7
Q ss_pred EEEECHHHHHHHHHHHH-HCCEEEEECCCCCHHHHHHHHHHHHHHHHH-CCCCC-CCEEEEEEEECCCHHHHHH-HHHHH
Q ss_conf 99972144323322432-067589726899988802255557666542-02657-7539999983889589999-99999
Q gi|254780130|r 111 LLFAHPASCGHGLNLQY-GGNILVFFSLWWDLEEHQQMIERIGVTRQR-QAGFK-RAVFVYYLIAQNTIDELVL-QRLRT 186 (205)
Q Consensus 111 Vll~~~~a~g~GlnL~~-a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~h-R~GQ~-~~v~v~~l~~~~tiEe~i~-~~l~~ 186 (205)
+++.+.++-..-.-|+. .-+.||+|+++.| .+-|+-+|+|. |.+|. ....||.|+.-+||||--| ..+++
T Consensus 543 ilistfksL~~nC~L~e~~P~Yvimy~~d~~------FIRq~EVY~A~v~~~~p~drmrVYFlyYGgS~EEQ~YLts~RR 616 (939)
T TIGR00596 543 ILISTFKSLEDNCVLEELKPRYVIMYEPDVS------FIRQVEVYKASVRPLRPLDRMRVYFLYYGGSVEEQRYLTSVRR 616 (939)
T ss_pred HHHHHHHHHHHCCCCCCCCCCEEEEECCCCC------CEEEEEEEEEEECCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
T ss_conf 0122334320033100278535898578879------2214788988853886955125778761772678778767888
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999999
Q gi|254780130|r 187 KSTIQDLLLNA 197 (205)
Q Consensus 187 K~~~~~~~l~~ 197 (205)
=++-++.++..
T Consensus 617 EKdAF~kLIrE 627 (939)
T TIGR00596 617 EKDAFEKLIRE 627 (939)
T ss_pred HHHHHHHHHHC
T ss_conf 88888788640
No 97
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=93.40 E-value=0.55 Score=24.98 Aligned_cols=114 Identities=12% Similarity=0.175 Sum_probs=68.3
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHH----HHCCCCCEEEECHHHHHHHHHHHHHCCEE
Q ss_conf 899711057899999998765304778----------2348999999----72789869997214432332243206758
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQE----WNEGKIPLLFAHPASCGHGLNLQYGGNIL 132 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~----f~~~~~~Vll~~~~a~g~GlnL~~a~~~v 132 (205)
++.+|+|=+|-......+-..+.+... ..-|.+.++. |+.....|+| ++++--.|++.. .+++
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvV-aTQVIEagvDid--fd~m 515 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVV-ATQVIEAGVDID--FDVL 515 (733)
T ss_pred CCCCEEEEEECHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEE-ECCEEEEEECCC--CCEE
T ss_conf 5882899992789999999998555895799886355766999999998887537862999-834599886266--6846
Q ss_pred EEECCCCCHHHHHHHHHHHHHHHHHCCC--CCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 9726899988802255557666542026--577539999983889589999999999999
Q gi|254780130|r 133 VFFSLWWDLEEHQQMIERIGVTRQRQAG--FKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 133 I~~~~~~n~~~~~Qa~~Ri~~~r~hR~G--Q~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
| -++ =......|+-||+ +|.| ....+.+|...-.+..+.+.++....+...
T Consensus 516 I-Te~-aPidSLIQR~GRv-----~R~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 568 (733)
T COG1203 516 I-TEL-APIDSLIQRAGRV-----NRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKS 568 (733)
T ss_pred E-ECC-CCHHHHHHHHHHH-----HHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHH
T ss_conf 6-347-8756799987777-----415666687169983466777610332210434113
No 98
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=93.33 E-value=0.57 Score=24.92 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=73.1
Q ss_pred CCHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 572343349999861--48997110578999999987653047782--------34899999972789869997214432
Q gi|254780130|r 51 VHDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 51 ~~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~~--------~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
....|++++.+-+.+ ..|+||+|-+...+.=+.|...|...... ..++..|=..--..-.|.+++ +.||
T Consensus 469 t~~~K~~Aii~ei~~~~~~GqPVLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk~~~~EA~IIA~AG~~GaVTIAT-NMAG 547 (673)
T PRK12898 469 TLAAKWAAVAARVRELHASGRPVLVGTRSVAASERLSALLREAGLPHQVLNAKQDAEEAAIVARAGQRGRITVAT-NMAG 547 (673)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCHHHCCCCCHHHHHHHHHHCCCCCCEEEEC-CCCC
T ss_conf 999999999999999986799889983758999999999998699756647866687999999439999879702-3678
Q ss_pred HHHHHH-------HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 332243-------206758972689998880225555766654202657753999
Q gi|254780130|r 121 HGLNLQ-------YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 121 ~GlnL~-------~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
-|.+.. .+.=+||--+..-| -++||+-|+|+-|=|-.-....|
T Consensus 548 RGTDI~Lg~~V~~~GGLhVIgTerheS-----rRIDnQLrGRsGRQGDPGss~f~ 597 (673)
T PRK12898 548 RGTDIKLEPEVAARGGLHVILTERHES-----ARIDRQLAGRCGRQGDPGSSEAI 597 (673)
T ss_pred CCCCCCCCHHHHHCCCCEEEECCCCCH-----HHHHHHHHCCCCCCCCCCCEEEE
T ss_conf 986847676788628988984375511-----24565642354468999851489
No 99
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=93.07 E-value=0.62 Score=24.69 Aligned_cols=112 Identities=15% Similarity=0.116 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCCH--------HHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 5723433499998614--8997110578999999987653047782--------34899999972789869997214432
Q gi|254780130|r 51 VHDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRTL--------DKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 51 ~~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~~--------~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
....|++++.+-+.+. .|+||+|-+.-.+.=+.|...|...... ..++..|=..--..-.|.+++- .||
T Consensus 613 t~~~K~~Aii~ei~~~~~~GqPVLVGT~SVe~SE~lS~~L~~~gi~h~VLNAk~h~~EAeIIA~AG~~GaVTIATN-MAG 691 (1111)
T PRK12901 613 TKREKYNAVIEEIVELVEAGRPVLVGTTSVEISELLSRMLKMRKIPHNVLNAKLHQKEAEIVAEAGQKGTVTIATN-MAG 691 (1111)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCHHHHHCCCCHHHHHHHHHHCCCCCCEEEECC-CCC
T ss_conf 9999999999999999964997899717188899999999877873877377877999999984689996797243-457
Q ss_pred HHHHH--H-----HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 33224--3-----206758972689998880225555766654202657753999
Q gi|254780130|r 121 HGLNL--Q-----YGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 121 ~GlnL--~-----~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
-|.+. . .+.=+||--++.-| -++||+-|+||-|=|-.-....|
T Consensus 692 RGTDIkL~~~v~~~GGL~VigTERheS-----rRIDnQLrGRsGRQGDPG~S~F~ 741 (1111)
T PRK12901 692 RGTDIKLSPEVKAAGGLAIIGTERHES-----RRVDRQLRGRAGRQGDPGSSQFF 741 (1111)
T ss_pred CCCCCCCCHHHHHCCCCEEEECCCCHH-----HHHHHHHCCCCCCCCCCCCCEEE
T ss_conf 885825365578627827752032312-----56777860432446898754266
No 100
>PRK10689 transcription-repair coupling factor; Provisional
Probab=92.97 E-value=0.65 Score=24.61 Aligned_cols=112 Identities=12% Similarity=0.287 Sum_probs=66.2
Q ss_pred CCCCEEEHHHHHHHHHHH----HHHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf 899711057899999998----765304778--------23489999997278986999721443233224320675897
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARL----QKAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l----~~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205)
.|-.|..-++-.++++.+ ++.+++... ..+-+..+.+|-++++.||+|++ ---.||+... ||++|.
T Consensus 808 rggq~~~~~~~~~~i~~~~~~~~~~~p~~~~~~~hg~m~~~~~e~~m~~f~~~~~~~l~~tt-iie~g~dip~-ant~ii 885 (1148)
T PRK10689 808 RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-IIETGIDIPT-ANTIII 885 (1148)
T ss_pred HCCEEEEEECCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEECC-EEECCCCCCC-CCEEEE
T ss_conf 18808999532541999999999748777189998999989999999999759988999897-8765866778-847999
Q ss_pred ECC-CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC-CCHHHHHHHHHHHH
Q ss_conf 268-999888022555576665420265775399999838-89589999999999
Q gi|254780130|r 135 FSL-WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ-NTIDELVLQRLRTK 187 (205)
Q Consensus 135 ~~~-~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~-~tiEe~i~~~l~~K 187 (205)
.+. .+-.+..-|-.||+. |-+ +.-+.|-+.-. ..+-+.-.++|..=
T Consensus 886 ~~a~~~gl~ql~qlrgrvg-----r~~--~~ayaYll~~~~~~lt~~A~kRL~ai 933 (1148)
T PRK10689 886 ERADHFGLAQLHQLRGRVG-----RSH--HQAYAWLLTPHPKAMTTDAQKRLEAI 933 (1148)
T ss_pred ECHHHCCHHHHHHHCCCCC-----CCC--CEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 7532145577775436557-----788--70799998678777898999999999
No 101
>KOG0346 consensus
Probab=92.89 E-value=0.28 Score=26.65 Aligned_cols=98 Identities=10% Similarity=0.142 Sum_probs=65.9
Q ss_pred CCCEEEHHHHHHH---HHHHHHH-------HHCCCCHHHHHHHHHHHHCCCCCEEEECHH--------------------
Q ss_conf 9971105789999---9998765-------304778234899999972789869997214--------------------
Q gi|254780130|r 68 AAPIIVAYHFNSD---LARLQKA-------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPA-------------------- 117 (205)
Q Consensus 68 ~~kviVf~~f~~~---l~~l~~~-------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~-------------------- 117 (205)
..|.+||.|-.+- +...-+. +-+..+.+.|-.+++.||.|-+++++++-.
T Consensus 268 ~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~ 347 (569)
T KOG0346 268 RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNP 347 (569)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHHHHCCCCCCCCCCCC
T ss_conf 27549998500246889999998073766525646643212289886076115999706764135552111254445688
Q ss_pred -----H---------HHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf -----4---------3233224320675897268999888022555576665420265775399999838
Q gi|254780130|r 118 -----S---------CGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205)
Q Consensus 118 -----a---------~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205)
+ .+-||+++. .+.|+.||.|-++..|.-++||-+ |-|-+..+ .-|+..
T Consensus 348 kndkkskkK~D~E~GVsRGIDF~~-V~~VlNFD~P~t~~sYIHRvGRTa-----Rg~n~Gta--lSfv~P 409 (569)
T KOG0346 348 KNDKKSKKKLDKESGVSRGIDFHH-VSNVLNFDFPETVTSYIHRVGRTA-----RGNNKGTA--LSFVSP 409 (569)
T ss_pred CCCCCCCCCCCCHHCHHCCCCCHH-EEEEEECCCCCCHHHHHHHCCCCC-----CCCCCCCE--EEEECC
T ss_conf 774212444570112121654012-114561378985478888612223-----47898725--999664
No 102
>KOG0951 consensus
Probab=92.77 E-value=0.27 Score=26.67 Aligned_cols=88 Identities=18% Similarity=0.319 Sum_probs=56.3
Q ss_pred HHHHHCCCCCEEEHHHHHHHH----HHHHH---------HH-HC---------------------------------CCC
Q ss_conf 998614899711057899999----99876---------53-04---------------------------------778
Q gi|254780130|r 61 VIIEKANAAPIIVAYHFNSDL----ARLQK---------AF-PQ---------------------------------GRT 93 (205)
Q Consensus 61 ~ii~~~~~~kviVf~~f~~~l----~~l~~---------~~-~~---------------------------------~~~ 93 (205)
.+++.+....|+||.|.+.+. .+|+. +| .. |..
T Consensus 539 KVme~agk~qVLVFVHsRKET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~ 618 (1674)
T KOG0951 539 KVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLN 618 (1674)
T ss_pred HHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHCCCEEECCCCC
T ss_conf 99973787858999983357889999999988645379998763441145655444201583078773135133116778
Q ss_pred HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-----ECC------CCCHHHHHHHHHHH
Q ss_conf 23489999997278986999721443233224320675897-----268------99988802255557
Q gi|254780130|r 94 LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-----FSL------WWDLEEHQQMIERI 151 (205)
Q Consensus 94 ~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-----~~~------~~n~~~~~Qa~~Ri 151 (205)
...|....+-|.+|.++|++.+ +.-+-|+||. +|+||. |+| ..+|.+..|..||-
T Consensus 619 R~dR~~~EdLf~~g~iqvlvst-atlawgvnlp--ahtViikgtqvy~pekg~w~elsp~dv~qmlgra 684 (1674)
T KOG0951 619 RKDRELVEDLFADGHIQVLVST-ATLAWGVNLP--AHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRA 684 (1674)
T ss_pred CCHHHHHHHHHHCCCEEEEEEE-HHHHHHCCCC--CCEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 6237789998744862688750-2456424777--6268960762158345766627879999997544
No 103
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=92.50 E-value=0.38 Score=25.86 Aligned_cols=79 Identities=14% Similarity=0.163 Sum_probs=46.1
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCCCC---HH-----HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC
Q ss_conf 4899711057899999998765304778---23-----489999997278986999721443233224320675897268
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQGRT---LD-----KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL 137 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~~~---~~-----~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~ 137 (205)
..+.+.+||++-....+.+...+..... .. .+... +-+.+..++++++ ++.-.||++ . .+.+| .+
T Consensus 270 ~~~~r~~v~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--rek~~~~~~vVaT-saLElGIDi-~-~d~~i-~~- 342 (357)
T TIGR03158 270 LPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKD--RERAMQFDILLGT-STVDVGVDF-K-RDWLI-FS- 342 (357)
T ss_pred HHCCCEEEEECCHHHHHHHHHHHHHCCCCCHHHHHCCCCHHHH--HHCCCCCCEEEEC-CCCEEEEEC-C-CCEEE-EC-
T ss_conf 5267179995589999999999986336411455425561889--8504899999987-701035611-7-89899-58-
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 99988802255557
Q gi|254780130|r 138 WWDLEEHQQMIERI 151 (205)
Q Consensus 138 ~~n~~~~~Qa~~Ri 151 (205)
+++...+.|+.||.
T Consensus 343 ~~~v~sl~QR~GRa 356 (357)
T TIGR03158 343 ARDAAAFWQRLGRL 356 (357)
T ss_pred CCCHHHHHHCCCCC
T ss_conf 98788899726679
No 104
>KOG0337 consensus
Probab=91.94 E-value=0.3 Score=26.49 Aligned_cols=113 Identities=18% Similarity=0.207 Sum_probs=73.3
Q ss_pred CHHHHHHHHHHHHHCC-CCCEEEHHHHHHHHHHHHHHHHC---C-----CCH--HHHHHHHHHHHCCCCCEEEECHHHHH
Q ss_conf 7234334999986148-99711057899999998765304---7-----782--34899999972789869997214432
Q gi|254780130|r 52 HDEKIKALEVIIEKAN-AAPIIVAYHFNSDLARLQKAFPQ---G-----RTL--DKDPCTIQEWNEGKIPLLFAHPASCG 120 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~~-~~kviVf~~f~~~l~~l~~~~~~---~-----~~~--~~r~~~i~~f~~~~~~Vll~~~~a~g 120 (205)
+.+|..+|..++...- .+.-+||+.-.+..+.+...+.. + +.. +.|..-+.+|..++..+++.+ ..|+
T Consensus 244 ~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvT-dvaa 322 (529)
T KOG0337 244 KAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVT-DVAA 322 (529)
T ss_pred CHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCEEEEE-HHHH
T ss_conf 178899999998512566650698315304789887898639874411144586766504203467755259984-2333
Q ss_pred HHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC
Q ss_conf 33224320675897268999888022555576665420265775399999838
Q gi|254780130|r 121 HGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ 173 (205)
Q Consensus 121 ~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~ 173 (205)
-|++..-.+| +|.||.|-.+..|.-+.+|.+ |.|.+- .-|-+++.
T Consensus 323 RG~diplldn-vinyd~p~~~klFvhRVgr~a-----ragrtg--~aYs~V~~ 367 (529)
T KOG0337 323 RGLDIPLLDN-VINYDFPPDDKLFVHRVGRVA-----RAGRTG--RAYSLVAS 367 (529)
T ss_pred CCCCCCCCCC-CCCCCCCCCCCEEEEEECCHH-----HCCCCC--EEEEEEEC
T ss_conf 3588765446-564567998755888712222-----145662--37999722
No 105
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=91.83 E-value=0.91 Score=23.79 Aligned_cols=107 Identities=13% Similarity=0.214 Sum_probs=61.9
Q ss_pred EEEHHHHHHHHHHHH----HHHHCCCC--------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-ECC
Q ss_conf 110578999999987----65304778--------23489999997278986999721443233224320675897-268
Q gi|254780130|r 71 IIVAYHFNSDLARLQ----KAFPQGRT--------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-FSL 137 (205)
Q Consensus 71 viVf~~f~~~l~~l~----~~~~~~~~--------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-~~~ 137 (205)
|.--++-.++++.+. ...++..+ -.+-+.+...|-++++.||+|++- --.||+... ||++|. -.-
T Consensus 806 vfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTI-IEtGIDIPn-ANTiIIe~AD 883 (1139)
T COG1197 806 VFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTI-IETGIDIPN-ANTIIIERAD 883 (1139)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEE-EECCCCCCC-CCEEEEECCC
T ss_conf 99994333129999999998598468888525888899999999997288888988234-304767778-7558896543
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEC--CCHHHHHHHHHHHH
Q ss_conf 999888022555576665420265775399999838--89589999999999
Q gi|254780130|r 138 WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQ--NTIDELVLQRLRTK 187 (205)
Q Consensus 138 ~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~--~tiEe~i~~~l~~K 187 (205)
.+-.+..-|-.||+ +|.| ..=|=||.+. ..+-+.-.++|..=
T Consensus 884 ~fGLsQLyQLRGRV--GRS~------~~AYAYfl~p~~k~lT~~A~kRL~aI 927 (1139)
T COG1197 884 KFGLAQLYQLRGRV--GRSN------KQAYAYFLYPPQKALTEDAEKRLEAI 927 (1139)
T ss_pred CCCHHHHHHHCCCC--CCCC------CEEEEEEEECCCCCCCHHHHHHHHHH
T ss_conf 34578888751654--7767------62899996267554587899999999
No 106
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=91.58 E-value=0.97 Score=23.63 Aligned_cols=111 Identities=15% Similarity=0.164 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 723433499998614--899711057899999998765304778----2----348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|.+++.+-+.+. .|+||+|-+.-.+.=+.|...|..... . +.++..|=..--..-.|.+++ +.||-
T Consensus 420 ~~~K~~Avv~ei~~~h~~GqPVLVGT~SVe~SE~ls~~L~~~gi~h~VLNAk~~~~EA~IIA~AG~~GaVTIAT-NMAGR 498 (775)
T PRK12326 420 AAEKNDAIVEHIAEVHETGQPVLVGTRDVAESEELAERLVRRGVPAVVLNAKNDAEEAAVIAEAGKYGAVTVST-QMAGR 498 (775)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHCCCCCCEEEEC-CCCCC
T ss_conf 99999999999999997599889970718989999999987699830236897276999999459999879823-36789
Q ss_pred HHHHHH--------------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 322432--------------06758972689998880225555766654202657753999
Q gi|254780130|r 122 GLNLQY--------------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVY 168 (205)
Q Consensus 122 GlnL~~--------------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~ 168 (205)
|.+..- +.=+||--++.-| .++||+-|+||-|=|-.-....|
T Consensus 499 GTDIkLGg~~e~~~~~V~elGGL~VIgterheS-----rRIDnQLrGRaGRQGDPGsS~Ff 554 (775)
T PRK12326 499 GTDIRLGGSDEADHDRVVELGGLHVVGTGRHRS-----QRLDNQLRGRAGRQGDPGSSVFF 554 (775)
T ss_pred CCCEECCCCCHHHHHHHHHCCCEEEEECCCCHH-----HHHHHHHHCCCCCCCCCCCCEEE
T ss_conf 868414897223247898659907852143334-----67786762231237999861589
No 107
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=91.41 E-value=1 Score=23.53 Aligned_cols=111 Identities=17% Similarity=0.155 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 723433499998614--899711057899999998765304778----2----348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|++++.+-+.+. .|+||+|-+...+.=+.|...|..... . ..++..|=..---.-.|.+++- .||-
T Consensus 431 ~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~h~~EA~Iia~AG~~gaVTIATN-MAGR 509 (908)
T PRK13107 431 ADEKYQAIIKDIKDCRERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTGAVTIATN-MAGR 509 (908)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHCCCCCCEEEECC-CCCC
T ss_conf 999999999999999975998899505289999999999746785301048876889999995499998798333-6789
Q ss_pred HHHHHHH------------------------------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 3224320------------------------------------6758972689998880225555766654202657753
Q gi|254780130|r 122 GLNLQYG------------------------------------GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205)
Q Consensus 122 GlnL~~a------------------------------------~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205)
|.+..-+ .=+||--++.-| -++||+-|+|+-|=|-.-..
T Consensus 510 GTDI~LGGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~Vigterhes-----rRiDnQLrGRsgRQGDpG~s 584 (908)
T PRK13107 510 GTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHES-----RRIDNQLRGRAGRQGDAGSS 584 (908)
T ss_pred CCCEECCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-----HHHHHHHHCCCCCCCCCCCC
T ss_conf 8684258862021332028648789999999988666898659808985143312-----46777761222357899853
Q ss_pred EEE
Q ss_conf 999
Q gi|254780130|r 166 FVY 168 (205)
Q Consensus 166 ~v~ 168 (205)
..|
T Consensus 585 rFf 587 (908)
T PRK13107 585 RFY 587 (908)
T ss_pred EEE
T ss_conf 365
No 108
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=91.28 E-value=1 Score=23.45 Aligned_cols=111 Identities=14% Similarity=0.125 Sum_probs=70.4
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 723433499998614--899711057899999998765304778----2----348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|++++.+-+.+. .|+||+|-+...+.=+.|...|..... . ..++..|=..---.-.|.+++- .||-
T Consensus 426 ~~~K~~Av~~ei~~~~~~gqPVLvGT~sve~SE~ls~~L~~~gi~h~VLNAk~~~~EA~Iia~AG~~gaVTIATN-MAGR 504 (896)
T PRK13104 426 QADKFQAIIEDVRECGVRRQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGAVTIATN-MAGR 504 (896)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEECCC-CCCC
T ss_conf 999999999999999975997899348579899999999986992465267874789999983389996897165-5688
Q ss_pred HHHHHH-------------------------------------HCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 322432-------------------------------------0675897268999888022555576665420265775
Q gi|254780130|r 122 GLNLQY-------------------------------------GGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRA 164 (205)
Q Consensus 122 GlnL~~-------------------------------------a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~ 164 (205)
|.+..- +.=+||--++.-| -++||+-|+||-|=|-.-.
T Consensus 505 GTDI~LGg~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~v~~~GGL~Vigterhes-----rRiD~QLrGRaGRQGDPG~ 579 (896)
T PRK13104 505 GTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHES-----RRIDNQLRGRAGRQGDPGS 579 (896)
T ss_pred CCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHH-----HHHHHHHHCCCCCCCCCCC
T ss_conf 85821787512444305655116679999999998533442058728986043312-----4677786053245689986
Q ss_pred EEEE
Q ss_conf 3999
Q gi|254780130|r 165 VFVY 168 (205)
Q Consensus 165 v~v~ 168 (205)
...|
T Consensus 580 s~F~ 583 (896)
T PRK13104 580 SRFY 583 (896)
T ss_pred CEEE
T ss_conf 3266
No 109
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=90.51 E-value=0.77 Score=24.18 Aligned_cols=84 Identities=14% Similarity=0.259 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHCCCCCEEEHHHH---HHHHHHHHHHHHCCC-----CHHHHHHHHHHHHCCCCCEEEECHHHHH---HH
Q ss_conf 343349999861489971105789---999999876530477-----8234899999972789869997214432---33
Q gi|254780130|r 54 EKIKALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQGR-----TLDKDPCTIQEWNEGKIPLLFAHPASCG---HG 122 (205)
Q Consensus 54 ~Kl~~l~~ii~~~~~~kviVf~~f---~~~l~~l~~~~~~~~-----~~~~r~~~i~~f~~~~~~Vll~~~~a~g---~G 122 (205)
+-+..+.+++... |.-.+||.+- .+..+.|.+.+.... ...+.+...+.|..|++.||++...-=| -|
T Consensus 322 ~~~e~~~elvk~l-G~GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~~~~~le~F~~GeidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 322 ESLEKVVELVKKL-GDGGLIFVPIDYGREKAEELAEYLRSHGINAELIHAEKEEALEDFEEGEVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred CCHHHHHHHHHHH-CCCEEEEEECHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCCCEEEEEEECCCCCCEEEC
T ss_conf 6378899999984-897499997177389999999999866960798623202245665067601799850213430224
Q ss_pred HHHHHHCCEEEEECCC
Q ss_conf 2243206758972689
Q gi|254780130|r 123 LNLQYGGNILVFFSLW 138 (205)
Q Consensus 123 lnL~~a~~~vI~~~~~ 138 (205)
|+|......+||+..|
T Consensus 401 lDLP~rirYaIF~GvP 416 (1187)
T COG1110 401 LDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CCCHHHEEEEEEECCC
T ss_conf 7743454578995587
No 110
>KOG0950 consensus
Probab=90.28 E-value=0.47 Score=25.35 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=46.6
Q ss_pred CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCC-----CHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 7782348999999727898699972144323322432067589726899-----98880225555766654202657
Q gi|254780130|r 91 GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWW-----DLEEHQQMIERIGVTRQRQAGFK 162 (205)
Q Consensus 91 ~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~-----n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205)
|.+.++|+-+...|..|.+.|+.++.. -..|.||. |..+|.=.|.. .-..|.|..|| |-|.|--
T Consensus 531 GLT~eER~~iE~afr~g~i~vl~aTST-laaGVNLP--ArRVIiraP~~g~~~l~~~~YkQM~GR-----AGR~gid 599 (1008)
T KOG0950 531 GLTSEEREIIEAAFREGNIFVLVATST-LAAGVNLP--ARRVIIRAPYVGREFLTRLEYKQMVGR-----AGRTGID 599 (1008)
T ss_pred CCCCCHHHHHHHHHHHCCEEEEEECCH-HHCCCCCC--CCEEEEECCCCCCCHHHHHHHHHHHHH-----HHHCCCC
T ss_conf 465006888999997467699994344-64068687--511587477546230002467765302-----0003346
No 111
>KOG0948 consensus
Probab=90.04 E-value=0.72 Score=24.34 Aligned_cols=75 Identities=25% Similarity=0.407 Sum_probs=53.2
Q ss_pred HHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC---------CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEE
Q ss_conf 999727898699972144323322432067589726---------89998880225555766654202657753999998
Q gi|254780130|r 101 IQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS---------LWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLI 171 (205)
Q Consensus 101 i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~---------~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~ 171 (205)
.--|+.|=++||+++. .-+.|||+. |.+|+|-. .|-+...|.|.-|| |-|-|-...-.++-++
T Consensus 465 EILFqEGLvKvLFATE-TFsiGLNMP--AkTVvFT~~rKfDG~~fRwissGEYIQMSGR-----AGRRG~DdrGivIlmi 536 (1041)
T KOG0948 465 EILFQEGLVKVLFATE-TFSIGLNMP--AKTVVFTAVRKFDGKKFRWISSGEYIQMSGR-----AGRRGIDDRGIVILMI 536 (1041)
T ss_pred HHHHHCCHHHHHHHHH-HHHHCCCCC--CEEEEEEECCCCCCCCEEEECCCCEEEECCC-----CCCCCCCCCCEEEEEE
T ss_conf 9998502798877541-231005886--4058874011147864045336635774153-----4556778775299995
Q ss_pred ECCCHHHHHHHHH
Q ss_conf 3889589999999
Q gi|254780130|r 172 AQNTIDELVLQRL 184 (205)
Q Consensus 172 ~~~tiEe~i~~~l 184 (205)
...+|..+.+.+
T Consensus 537 -Dekm~~~~ak~m 548 (1041)
T KOG0948 537 -DEKMEPQVAKDM 548 (1041)
T ss_pred -CCCCCHHHHHHH
T ss_conf -676797899998
No 112
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=89.02 E-value=1.6 Score=22.37 Aligned_cols=81 Identities=14% Similarity=0.167 Sum_probs=50.3
Q ss_pred HHHHHHHHCCCCCEEEHHHHHH---HHHHHHHHHH--------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 4999986148997110578999---9999876530--------4778234899999972789869997214432332243
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNS---DLARLQKAFP--------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~---~l~~l~~~~~--------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205)
.+..+++..+|.-.+.|+.+.. ..+.++..+. .|.....|...++.|+.++..||+++ .+-.+|+++.
T Consensus 747 ~i~~l~~~~~G~~LVLFtS~~~L~~v~~~l~~~~~~~~~~ll~Qg~~~~sr~~ll~~F~~~~~svLlGt-~SFwEGVDlp 825 (932)
T PRK08074 747 YIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVTGGSRARLMKKFQQFDKAILLGT-SSFWEGIDIP 825 (932)
T ss_pred HHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEC-CCCCCCCCCC
T ss_conf 999999872999999926599999999998643335795599878987509999999984798499965-6643562279
Q ss_pred H-HCCEEEEECCCC
Q ss_conf 2-067589726899
Q gi|254780130|r 127 Y-GGNILVFFSLWW 139 (205)
Q Consensus 127 ~-a~~~vI~~~~~~ 139 (205)
- +.+.+|..-+||
T Consensus 826 Gd~L~~ViI~kLPF 839 (932)
T PRK08074 826 GDELSCLVIVRLPF 839 (932)
T ss_pred CCCEEEEEEEECCC
T ss_conf 98868999980899
No 113
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=88.04 E-value=1.9 Score=22.00 Aligned_cols=111 Identities=17% Similarity=0.158 Sum_probs=70.0
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCC----H----HHHHHHHHHHHCCCCCEEEECHHHHHH
Q ss_conf 723433499998614--899711057899999998765304778----2----348999999727898699972144323
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----L----DKDPCTIQEWNEGKIPLLFAHPASCGH 121 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~----~----~~r~~~i~~f~~~~~~Vll~~~~a~g~ 121 (205)
...|.+++.+-+.+. .|+||+|-+...+.=+.|...|..... . ..++..+=..--..-.|.+++- .||-
T Consensus 412 ~~~K~~ai~~ei~~~~~~gqPvLvGT~sve~SE~ls~~L~~~~i~h~vLNAk~~~~EA~Iia~AG~~gaVTiATN-MAGR 490 (833)
T PRK12904 412 EKEKFDAVVEDIKERHKKGQPVLVGTTSIEKSELLSKLLKKAGIPHNVLNAKNHEREAEIIAQAGRPGAVTIATN-MAGR 490 (833)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCHHHCCCCHHHHHHHHHHHCCCCCCEEEEEC-CCCC
T ss_conf 999999999999999976997899427479899999999873782776177366668899995599997687402-5678
Q ss_pred HHHHHHH------------------------------------CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 3224320------------------------------------6758972689998880225555766654202657753
Q gi|254780130|r 122 GLNLQYG------------------------------------GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205)
Q Consensus 122 GlnL~~a------------------------------------~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205)
|.+..-+ .=+||--++.-| -++||+-|+||-|=|-.-..
T Consensus 491 GTDI~LGGn~e~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigterhes-----rRiD~QLrGR~GRQGDpG~s 565 (833)
T PRK12904 491 GTDIKLGGNPEMLAAGLEDETEEQIAKIKAEWQKEHEEVLEAGGLHVIGTERHES-----RRIDNQLRGRSGRQGDPGSS 565 (833)
T ss_pred CCCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHH-----HHHHHHHHCCCCCCCCCCCC
T ss_conf 8682168863344443200146678888888765337788638927985143334-----66787861221456899853
Q ss_pred EEE
Q ss_conf 999
Q gi|254780130|r 166 FVY 168 (205)
Q Consensus 166 ~v~ 168 (205)
..|
T Consensus 566 ~f~ 568 (833)
T PRK12904 566 RFY 568 (833)
T ss_pred EEE
T ss_conf 265
No 114
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative; InterPro: IPR006310 These are a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of Escherichia coli. .
Probab=87.51 E-value=2.1 Score=21.81 Aligned_cols=128 Identities=16% Similarity=0.222 Sum_probs=73.2
Q ss_pred CCCCEEEHHHHHH---HHHHHHHH--------HHCCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCE-EEE
Q ss_conf 8997110578999---99998765--------30477823489999997278986999721443233224320675-897
Q gi|254780130|r 67 NAAPIIVAYHFNS---DLARLQKA--------FPQGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNI-LVF 134 (205)
Q Consensus 67 ~~~kviVf~~f~~---~l~~l~~~--------~~~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~-vI~ 134 (205)
.++-+|.|+.+.- .-+.|..+ +.-+-+.+.+.++..+|++++-.||++. .+==+|++|+...-. +|.
T Consensus 765 ~~~~LVLFTS~~mL~~V~~~l~~l~~~~~~~~LaQ~~nsGs~~ki~K~F~~ge~~ILLG~-~SFWEGvDf~~~~~~~lvi 843 (944)
T TIGR01407 765 SPKILVLFTSKEMLKAVYDLLKELSEEEGLEVLAQGINSGSRAKIKKRFEKGEKAILLGA-SSFWEGVDFPGNELVILVI 843 (944)
T ss_pred CCCEEEEHHHHHHHHHHHHHHHHCCHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEECC-CCEECCCCCCCCCCEEEEE
T ss_conf 896275164899999999985302002580667412677857899998614787566115-5400240117997179998
Q ss_pred ECCCCC------------------------------HHHHHHHHHHHHHHHHHCCCCCCCEEE--EEEEECCCHHHHHHH
Q ss_conf 268999------------------------------888022555576665420265775399--999838895899999
Q gi|254780130|r 135 FSLWWD------------------------------LEEHQQMIERIGVTRQRQAGFKRAVFV--YYLIAQNTIDELVLQ 182 (205)
Q Consensus 135 ~~~~~n------------------------------~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v--~~l~~~~tiEe~i~~ 182 (205)
.-+||. .-++.||.||+. +|--|+.-+.| -+|+++. .-..+.+
T Consensus 844 ~RLPF~nP~~pL~kk~~~~~~~EG~npF~~~~lP~A~~RlrQalGRli----R~e~drg~~~~LD~Rl~~~~-Ygk~~~~ 918 (944)
T TIGR01407 844 PRLPFANPKEPLTKKKLQKLEEEGKNPFYDYALPMAILRLRQALGRLI----RRENDRGSILVLDKRLVTKR-YGKRFLK 918 (944)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHCCCCCHHCCCCHHHHHHHHHHHHHC----CCCCCCEEEEEECCCCCCCH-HHHHHHH
T ss_conf 528677885389999998854311464111013079999877510002----55235546899711011604-7899998
Q ss_pred HH----HHHHHH--HHHHHHHHHH
Q ss_conf 99----999999--9999999986
Q gi|254780130|r 183 RL----RTKSTI--QDLLLNALKK 200 (205)
Q Consensus 183 ~l----~~K~~~--~~~~l~~~~~ 200 (205)
.| ..|... ...++..+++
T Consensus 919 ~L~~~~~~K~~~qq~~~~~~~ik~ 942 (944)
T TIGR01407 919 SLPEVLSVKGLSQQLEELLEEIKE 942 (944)
T ss_pred HHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 400015467603568999999972
No 115
>TIGR00580 mfd transcription-repair coupling factor; InterPro: IPR004576 All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transcribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by TcrF, which releases RNAP and the truncated transcript. The TcrF may replace RNAP at the lesion site and then recruit the UvrA/B/C repair system.; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=87.39 E-value=0.9 Score=23.80 Aligned_cols=108 Identities=17% Similarity=0.319 Sum_probs=66.9
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHC----C--------CCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE
Q ss_conf 899711057899999998765304----7--------7823489999997278986999721443233224320675897
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQ----G--------RTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF 134 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~----~--------~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~ 134 (205)
.|+ |..-+|-.++++.+...+.. . .+-++=+.+...|..++.+|||||+ --=.||+... ||++|-
T Consensus 721 gGQ-vFyv~Nrie~i~~~~~~l~~LVP~arIaiaHGqM~e~eLE~~m~~F~~~~~~vLvcTT-IIE~GIDIPn-ANTiIi 797 (997)
T TIGR00580 721 GGQ-VFYVHNRIESIEKLKTQLRELVPEARIAIAHGQMTENELEEVMLEFYKGEFDVLVCTT-IIESGIDIPN-ANTIII 797 (997)
T ss_pred CCE-EEEEECCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEHH-HHHCCCCHHH-HHHHHH
T ss_conf 981-8998088135789999998508432678883356845689999986268433013221-4650564100-126868
Q ss_pred E-CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC-CHHHHHHHHH
Q ss_conf 2-689998880225555766654202657753999998388-9589999999
Q gi|254780130|r 135 F-SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN-TIDELVLQRL 184 (205)
Q Consensus 135 ~-~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~-tiEe~i~~~l 184 (205)
- --.|=.+..-|-.||+. |= ++.-+.|-|+... .+=+.-.+||
T Consensus 798 ~~AD~FGLaQLYQLRGRVG-----Rs--~~~AYAYlL~~~~~~Lt~~A~~RL 842 (997)
T TIGR00580 798 DRADKFGLAQLYQLRGRVG-----RS--KKKAYAYLLYPHQKALTEDALKRL 842 (997)
T ss_pred HHHCCCCHHHHHHCCCEEC-----CC--CCEEEEEECCCCCCCCCHHHHHHH
T ss_conf 7521147034745363120-----58--712689833477400145899999
No 116
>COG4889 Predicted helicase [General function prediction only]
Probab=86.72 E-value=1 Score=23.54 Aligned_cols=44 Identities=11% Similarity=0.274 Sum_probs=37.1
Q ss_pred CCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHH
Q ss_conf 8986999721443233224320675897268999888022555576
Q gi|254780130|r 107 GKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIG 152 (205)
Q Consensus 107 ~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205)
..++ +|.+.++.++|++.. |-+.+|||+|--+..+..||.||+-
T Consensus 527 neck-IlSNaRcLSEGVDVP-aLDsViFf~pr~smVDIVQaVGRVM 570 (1518)
T COG4889 527 NECK-ILSNARCLSEGVDVP-ALDSVIFFDPRSSMVDIVQAVGRVM 570 (1518)
T ss_pred CHHE-EECCCHHHHCCCCCC-CCCEEEEECCCHHHHHHHHHHHHHH
T ss_conf 2101-101331542378853-4123798668512889999999998
No 117
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=86.69 E-value=1 Score=23.53 Aligned_cols=83 Identities=17% Similarity=0.224 Sum_probs=57.4
Q ss_pred HHHHHH---HHHHCCCCCEEEHHHHH---HHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHH--
Q ss_conf 334999---98614899711057899---999998765304778------2348999999727898699972144323--
Q gi|254780130|r 56 IKALEV---IIEKANAAPIIVAYHFN---SDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGH-- 121 (205)
Q Consensus 56 l~~l~~---ii~~~~~~kviVf~~f~---~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~-- 121 (205)
-+.+.+ ++... |.=.|||..-. +..+.|.+.|....+ ..+.+...+.|..|+++|+++-..--|.
T Consensus 349 ~E~~~~sve~v~~L-G~GGlVyvs~~yG~e~a~ei~~~L~~~Gv~A~~~~~~k~~~~~~~F~~GE~dVliG~a~yyg~LV 427 (1843)
T TIGR01054 349 KEKLLESVELVKKL-GKGGLVYVSIDYGKEKAEEIKEFLREHGVKAVAYHAKKPKEDLEKFAEGEIDVLIGVASYYGVLV 427 (1843)
T ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHCCCEEEEEEEECCCCCEE
T ss_conf 68899999999984-79439997122255899999999985794799984037732034663485136877101547635
Q ss_pred -HHHHHHHCCEEEEECCCC
Q ss_conf -322432067589726899
Q gi|254780130|r 122 -GLNLQYGGNILVFFSLWW 139 (205)
Q Consensus 122 -GlnL~~a~~~vI~~~~~~ 139 (205)
||+|..-....||++.|=
T Consensus 428 RGLDLP~rvRYAvF~G~Pk 446 (1843)
T TIGR01054 428 RGLDLPERVRYAVFLGVPK 446 (1843)
T ss_pred ECCCCCCHHEEEEECCCCC
T ss_conf 3266610100023438995
No 118
>PRK09401 reverse gyrase; Reviewed
Probab=86.26 E-value=2 Score=21.93 Aligned_cols=81 Identities=12% Similarity=0.180 Sum_probs=52.7
Q ss_pred HHHHHHHHHCCCCCEEEHHHH---HHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCCCCCEEEECHH---HHHHHHHH
Q ss_conf 349999861489971105789---9999998765304-----778234899999972789869997214---43233224
Q gi|254780130|r 57 KALEVIIEKANAAPIIVAYHF---NSDLARLQKAFPQ-----GRTLDKDPCTIQEWNEGKIPLLFAHPA---SCGHGLNL 125 (205)
Q Consensus 57 ~~l~~ii~~~~~~kviVf~~f---~~~l~~l~~~~~~-----~~~~~~r~~~i~~f~~~~~~Vll~~~~---a~g~GlnL 125 (205)
+.+.+++... |.-.+||..- .+..+.|.+.+.+ +...+.+...+++|.+|++.||++... ..--||+|
T Consensus 317 ~~~~e~v~~l-G~GgLifv~~~~g~e~~~~~~~~l~~~g~~a~~~~~~~~~~le~f~~Ge~dvLvG~asyyg~lvRGiDl 395 (1176)
T PRK09401 317 EKLVELVKRL-GDGGLVFVPTDYGKEYAEELKEYLESHGIKAEAYSGRKKEFLEKFEEGEIDVLIGVASYYGVLVRGIDL 395 (1176)
T ss_pred HHHHHHHHHH-CCCEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 9999999984-895499976765889999999999976966999605886688897578864899970124521015776
Q ss_pred HHHCCEEEEECCC
Q ss_conf 3206758972689
Q gi|254780130|r 126 QYGGNILVFFSLW 138 (205)
Q Consensus 126 ~~a~~~vI~~~~~ 138 (205)
...-..+||+..|
T Consensus 396 P~~irYaiF~GvP 408 (1176)
T PRK09401 396 PERIRYAIFYGVP 408 (1176)
T ss_pred CCEEEEEEEECCC
T ss_conf 4116899997696
No 119
>KOG0947 consensus
Probab=86.14 E-value=1.9 Score=21.99 Aligned_cols=69 Identities=23% Similarity=0.331 Sum_probs=51.5
Q ss_pred HHHH-HHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC---------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 9999-997278986999721443233224320675897268---------999888022555576665420265775399
Q gi|254780130|r 98 PCTI-QEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL---------WWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205)
Q Consensus 98 ~~~i-~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~---------~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205)
+..+ --|+.|=++|++++.. -+.|+|+. |.++||-++ ..+|..|.|.-|| |-|-|-...-++
T Consensus 645 KE~VE~LFqrGlVKVLFATET-FAMGVNMP--ARtvVF~Sl~KhDG~efR~L~PGEytQMAGR-----AGRRGlD~tGTV 716 (1248)
T KOG0947 645 KEVVELLFQRGLVKVLFATET-FAMGVNMP--ARTVVFSSLRKHDGNEFRELLPGEYTQMAGR-----AGRRGLDETGTV 716 (1248)
T ss_pred HHHHHHHHHCCCEEEEEEHHH-HHHHCCCC--CEEEEEEEHHHCCCCCEEECCCHHHHHHHCC-----CCCCCCCCCCEE
T ss_conf 999999975585478864105-65116887--4067733000136864254387057764110-----244566867608
Q ss_pred EEEEECCC
Q ss_conf 99983889
Q gi|254780130|r 168 YYLIAQNT 175 (205)
Q Consensus 168 ~~l~~~~t 175 (205)
. +++++.
T Consensus 717 i-i~~~~~ 723 (1248)
T KOG0947 717 I-IMCKDS 723 (1248)
T ss_pred E-EEECCC
T ss_conf 9-996688
No 120
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=83.87 E-value=1.9 Score=22.06 Aligned_cols=111 Identities=15% Similarity=0.205 Sum_probs=62.8
Q ss_pred HHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHH
Q ss_conf 99998614899711057899999998765304-------------77823489999997278986999721443233224
Q gi|254780130|r 59 LEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNL 125 (205)
Q Consensus 59 l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~-------------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL 125 (205)
+..++.+.+|. ++||-.-..++..+...+.+ ..+...+..++..-..|.-+|++++ ..|-..||.
T Consensus 204 i~~~~~~~~G~-iLvFLPG~~EI~~~~~~L~~~~~~~~~i~pL~g~l~~~~Q~~~~~~~~~g~rKvIlaT-nIAEtSlTI 281 (812)
T PRK11664 204 TAELLRQESGS-LLLFLPGVGEIQRVQEQLASRVGSDVLLCPLYGALSLAEQQKAILPAPAGMRKVVLAT-NIAETSLTI 281 (812)
T ss_pred HHHHHHCCCCC-EEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEC-CCHHCEEEE
T ss_conf 99997358998-8997699899999999986335578089964478998898776067999953799950-200020201
Q ss_pred HHHCCEEE--------EECCCCCH-------HHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH
Q ss_conf 32067589--------72689998-------880225555766654202657753999998388958
Q gi|254780130|r 126 QYGGNILV--------FFSLWWDL-------EEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177 (205)
Q Consensus 126 ~~a~~~vI--------~~~~~~n~-------~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiE 177 (205)
. ...+|| .||+.-.. ..--+|..| +-|-|.+.+-.+|+|.++...+
T Consensus 282 ~-gV~~VIDsG~~r~~~~d~~~g~~~L~~~~iSkasa~QR-----aGRAGR~~pG~cyRL~s~~~~~ 342 (812)
T PRK11664 282 E-GIRLVVDSGLERVARFDPKTGLTRLETQRISQASMTQR-----AGRAGRLEPGICLHLYAKEQAE 342 (812)
T ss_pred C-CEEEEEECHHHHHHEECCCCCCCEEEEEECCHHHHHCC-----CCCCCCCCCCEEEEEECHHHHH
T ss_conf 7-81489740223443234357975676770454435313-----6767888997078733598885
No 121
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=83.39 E-value=3.3 Score=20.67 Aligned_cols=83 Identities=14% Similarity=0.220 Sum_probs=49.9
Q ss_pred HHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHCCCC-CEEEECHHHHHHHHHHH
Q ss_conf 33499998614899711057899999998765304778--------2348999999727898-69997214432332243
Q gi|254780130|r 56 IKALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQGRT--------LDKDPCTIQEWNEGKI-PLLFAHPASCGHGLNLQ 126 (205)
Q Consensus 56 l~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~~~--------~~~r~~~i~~f~~~~~-~Vll~~~~a~g~GlnL~ 126 (205)
...+.+++...+|. ++||..--..++.+.+.+..... .+.+...++.|..+.. .+++++ .+-.+|+|+.
T Consensus 468 ~~~i~~~~~~~~~~-~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~~~l~~f~~~~~~~~lv~~-gsf~EGVD~~ 545 (654)
T COG1199 468 AAYLREILKASPGG-VLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDEREELLEKFKASGEGLILVGG-GSFWEGVDFP 545 (654)
T ss_pred HHHHHHHHHHCCCC-EEEEECCHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHCCCCEEEEEE-CCEECCEECC
T ss_conf 99999999747998-899917899999999986511645334456878469999999714786499972-3310315168
Q ss_pred H-HCCEEEEECCCCC
Q ss_conf 2-0675897268999
Q gi|254780130|r 127 Y-GGNILVFFSLWWD 140 (205)
Q Consensus 127 ~-a~~~vI~~~~~~n 140 (205)
- ++..+|...+||-
T Consensus 546 g~~l~~vvI~~lPfp 560 (654)
T COG1199 546 GDALRLVVIVGLPFP 560 (654)
T ss_pred CCCEEEEEEEECCCC
T ss_conf 876579999826899
No 122
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=82.80 E-value=3.5 Score=20.54 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----HH----HHHHHHHHHHCCCC-CEEEECHHHHHH
Q ss_conf 2343349999861--4899711057899999998765304778----23----48999999727898-699972144323
Q gi|254780130|r 53 DEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----LD----KDPCTIQEWNEGKI-PLLFAHPASCGH 121 (205)
Q Consensus 53 ~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~----~r~~~i~~f~~~~~-~Vll~~~~a~g~ 121 (205)
..|..++.+-+.+ ..|.||+|-+...+.-+.+.+.+..... .+ .++..+-. +.|.. -|.+++ ..||-
T Consensus 412 ~~K~~Aiv~~I~~~~~~gqPvLvgT~sie~SE~ls~~L~~~~i~h~VLNAk~h~~EA~Iia-~AG~~gaVTiAT-NMAGR 489 (822)
T COG0653 412 EEKFKAIVEDIKERHEKGQPVLVGTVSIEKSELLSKLLRKAGIPHNVLNAKNHAREAEIIA-QAGQPGAVTIAT-NMAGR 489 (822)
T ss_pred HHHHHHHHHHHHHHHHCCCCEEECCCCEECCHHHHHHHHHCCCCCEEECCCCHHHHHHHHH-HCCCCCCCCCCC-CCCCC
T ss_conf 9889999999999996599889767314225267789986499740440436799999876-127888663165-32467
Q ss_pred HHHHHHHCC----------EEEEECCCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 322432067----------58972689998880225555766654202657
Q gi|254780130|r 122 GLNLQYGGN----------ILVFFSLWWDLEEHQQMIERIGVTRQRQAGFK 162 (205)
Q Consensus 122 GlnL~~a~~----------~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~ 162 (205)
|.++.-..+ ++|=-+..-| ..+|.+.|+|+-|-|-.
T Consensus 490 GTDIkLg~~~~~V~~lGGL~VIgTERhES-----RRIDnQLRGRsGRQGDp 535 (822)
T COG0653 490 GTDIKLGGNPEFVMELGGLHVIGTERHES-----RRIDNQLRGRAGRQGDP 535 (822)
T ss_pred CCCCCCCCCHHHHHHHCCCEEEECCCCHH-----HHHHHHHHCCCCCCCCC
T ss_conf 75203689778999707856873254215-----67777750455568996
No 123
>pfam08469 NPHI_C Nucleoside triphosphatase I C-terminal. This viral domain is found to the C-terminus of Poxvirus nucleoside triphosphatase phosphohydrolase I (NPH I) together with the helicase conserved C-terminal domain (pfam00271).
Probab=81.29 E-value=4 Score=20.22 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=22.5
Q ss_pred HHHHHHHHCCCCCEEEHHHHHH-HHHHHHHHHHCCCCHH
Q ss_conf 4999986148997110578999-9999876530477823
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNS-DLARLQKAFPQGRTLD 95 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~-~l~~l~~~~~~~~~~~ 95 (205)
.|.+++..-.++-..+|.-|++ .+|+|...++...+++
T Consensus 30 dlldIIk~Kskef~qLf~vlK~sSIEwI~~~~k~f~Pvd 68 (148)
T pfam08469 30 DLLDIIKDKSKEFNQLFKVLKHSSIEWIHSHYKDFEPVD 68 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999999975588999999998724999998587875455
No 124
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=80.63 E-value=4.2 Score=20.09 Aligned_cols=85 Identities=15% Similarity=0.222 Sum_probs=54.8
Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHH---HHHHHHHHC------C-CC-HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 499998614899711057899999---998765304------7-78-234899999972789869997214432332243
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDL---ARLQKAFPQ------G-RT-LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l---~~l~~~~~~------~-~~-~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205)
.+..+++...|.-.+.|+.|..-. +.++..++. . .+ ..-++...+.|++++..||+++ .+--+|+++.
T Consensus 461 ~l~~li~~~~Gr~LvLFTS~r~~~~~ae~l~~~l~~~~l~Qge~~~~~~l~~~~~~~f~~~~~svLfGT-~SfWEGVDvp 539 (636)
T TIGR03117 461 STAAILRKAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKNRLASAEQQFLALYANGIQPVLIAA-GGAWTGIDLT 539 (636)
T ss_pred HHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCC
T ss_conf 999999870798899704099999999999722788658745764035689999998727899689867-7640662578
Q ss_pred H---------HCCEEEEECCCCCHHH
Q ss_conf 2---------0675897268999888
Q gi|254780130|r 127 Y---------GGNILVFFSLWWDLEE 143 (205)
Q Consensus 127 ~---------a~~~vI~~~~~~n~~~ 143 (205)
- +.+.||.--+||-+-+
T Consensus 540 G~~~~~~~Gd~Ls~VII~rLPF~~p~ 565 (636)
T TIGR03117 540 HKPVSPDKDNLLTDLIITCAPFGLNR 565 (636)
T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCC
T ss_conf 86667887774206657569989998
No 125
>pfam06862 DUF1253 Protein of unknown function (DUF1253). This family represents the C-terminal portion (approximately 500 residues) of several hypothetical eukaryotic proteins of unknown function.
Probab=78.37 E-value=5 Score=19.68 Aligned_cols=134 Identities=13% Similarity=0.148 Sum_probs=71.4
Q ss_pred CHHHHHHHHH-HH----HHCCCCCEEEHHHHHHHHHHHHHHHHC----------CCCHHHHHHHHHHHHCCCCCEEEECH
Q ss_conf 7234334999-98----614899711057899999998765304----------77823489999997278986999721
Q gi|254780130|r 52 HDEKIKALEV-II----EKANAAPIIVAYHFNSDLARLQKAFPQ----------GRTLDKDPCTIQEWNEGKIPLLFAHP 116 (205)
Q Consensus 52 ~~~Kl~~l~~-ii----~~~~~~kviVf~~f~~~l~~l~~~~~~----------~~~~~~r~~~i~~f~~~~~~Vll~~~ 116 (205)
.+.+++...+ ++ .......++||..-=-+.-+|++.|.. ..+..+-..+...|..|..+|||.|.
T Consensus 272 ~d~Rf~~F~~~vlp~l~~~~~~~~~LI~iPSYfDfVRvRn~l~~~~~sF~~i~EYt~~~~israR~~F~~g~~~iLLyTE 351 (435)
T pfam06862 272 PDARFKFFTSNVLPQLRKSSYDSGTLIFIPSYFDFVRIRNYLKKENVSFAAISEYTSQKKISRARTLFFSGRIKVLLYTE 351 (435)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 46899999997605766357889789995645899999999987088377675638877899999998759941899960
Q ss_pred HHHHH-HHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 44323-32243206758972689998880225555766654202-6577539999983889589999999999999
Q gi|254780130|r 117 ASCGH-GLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQA-GFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 117 ~a~g~-GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~-GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
.+-=. =-.+ .+..++|||+||-+|.-|.....-+... ... +......+.-|.++ .|..-++++-.-...
T Consensus 352 R~hffrRy~i-kGi~~vIFY~~P~~p~FY~El~~~l~~s--~~~~~~~~~~~v~~lysk--yD~l~LErIVGt~ra 422 (435)
T pfam06862 352 RLHFFRRYKI-KGVKNVIFYGPPENPQFYSELVRMLGKS--VNNGEALAAASVRALYSK--YDALALERIVGTERA 422 (435)
T ss_pred HHHHEECCCC-CCCCEEEEECCCCCCHHHHHHHHHHHCC--CCCCCCCCCCEEEEEEEC--CHHHHHHHHHCHHHH
T ss_conf 2444112002-7874799978999833899998655125--445445677679999871--548789887578999
No 126
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=72.46 E-value=7.3 Score=18.79 Aligned_cols=115 Identities=11% Similarity=0.093 Sum_probs=75.2
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 899711057899999998765304778----------2348999999727898699972144323322432067589726
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~ 136 (205)
.+++++|-+=-+...+.|..-|.+... .-+|-.+++..+.|.+.|+++= +-..+||+|.. ++-|..+|
T Consensus 445 ~~er~LvttlTkkmaEdLt~yl~~~~ik~~YlHs~i~t~eR~eIl~~LR~G~~DVlVGI-NLLREGLDlPE-VSLVaILD 522 (657)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDIPE-VSLVAILD 522 (657)
T ss_pred CCCEEEEEECHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEE-CHHHCCCCCCC-EEEEEEEE
T ss_conf 69769999545989999999999679807996266618899999999858887589750-02204578761-35798870
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 89-----998880225555766654202657753999998388958999999999999
Q gi|254780130|r 137 LW-----WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205)
Q Consensus 137 ~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205)
-+ =|.....|-+||-+ |-- ...|..|-=-..+|+.+.|-+.-+++.-
T Consensus 523 ADKeGFLRs~~SLiQtiGRAA-----RN~-~G~vIlYAD~iT~SM~~ai~ET~rRR~i 574 (657)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAA-----RNV-NGKVILYADKITDSMQKAIDETERRREI 574 (657)
T ss_pred CCCCCCCCCCCHHHHHHHHHH-----HCC-CCEEEEEECCCCHHHHHHHHHHHHHHHH
T ss_conf 685221035205999987886-----257-9749998154509999999999989999
No 127
>TIGR00631 uvrb excinuclease ABC, B subunit; InterPro: IPR004807 All proteins in this family for which functions are known are DNA helicases that function in the nucleotide excision repair and are endonucleases that make the 3' incision next to DNA damage. They are part of a pathway requiring UvrA, UvrB, UvrC, and UvrD homologs.; GO: 0009381 excinuclease ABC activity, 0006289 nucleotide-excision repair, 0005737 cytoplasm, 0009380 excinuclease repair complex.
Probab=70.94 E-value=7.9 Score=18.59 Aligned_cols=125 Identities=14% Similarity=0.113 Sum_probs=82.1
Q ss_pred HHHHHHHH-CCCCCEEEHHHHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHH
Q ss_conf 49999861-48997110578999999987653047782----------34899999972789869997214432332243
Q gi|254780130|r 58 ALEVIIEK-ANAAPIIVAYHFNSDLARLQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQ 126 (205)
Q Consensus 58 ~l~~ii~~-~~~~kviVf~~f~~~l~~l~~~~~~~~~~----------~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~ 126 (205)
.+.+|.+- ..+++|+|-+=-+.-.|.|..-|.+-++. =+|-.++++.+.|.+.|||+= +=--+||+|.
T Consensus 436 L~~EI~~R~~~~ERvLVTTLTKkMAEdLTdYl~E~Gikv~YLHSeIdt~ER~eiirdLR~G~fDVLVGI-NLLREGLDlP 514 (667)
T TIGR00631 436 LLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLP 514 (667)
T ss_pred HHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEC-CHHHCCCCCH
T ss_conf 899999999728948998201677889999970588379871455789999999998447884088600-0200246511
Q ss_pred HHCCEEEEECCC-----CCHHHHHHHHHHHHHHHHHCCCCCCCEEEE-EEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 206758972689-----998880225555766654202657753999-99838895899999999999999
Q gi|254780130|r 127 YGGNILVFFSLW-----WDLEEHQQMIERIGVTRQRQAGFKRAVFVY-YLIAQNTIDELVLQRLRTKSTIQ 191 (205)
Q Consensus 127 ~a~~~vI~~~~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~-~l~~~~tiEe~i~~~l~~K~~~~ 191 (205)
.-+=+.| +|-+ =|--...|-|||=| |-= .-.|..| .=| .+|+++.|-++-++++-..
T Consensus 515 EVSLVAI-LDADKEGFLRSerSLIQTIGRAA-----RN~-~G~VilYAD~i-T~sM~~AI~ET~RRR~~Q~ 577 (667)
T TIGR00631 515 EVSLVAI-LDADKEGFLRSERSLIQTIGRAA-----RNV-NGKVILYADKI-TDSMQKAIEETERRRKIQI 577 (667)
T ss_pred HHHHHHH-HCCCCCCCCCCCCHHHHHHHHHH-----HCC-CCEEEEECCCC-CHHHHHHHHHHHHHHHHHH
T ss_conf 4889976-32788899866302788988875-----257-96599972870-0789999998788899999
No 128
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=69.76 E-value=8.4 Score=18.44 Aligned_cols=115 Identities=12% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEEC
Q ss_conf 899711057899999998765304778----------2348999999727898699972144323322432067589726
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFS 136 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~ 136 (205)
.+++++|-+--+...+.|..-|.+-.. .=+|..++++...|.+.|+++= +-..+||+|.. ++-|..+|
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGI-NLLREGLDiPE-VsLVAIlD 522 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-NLLREGLDLPE-VSLVAILD 522 (663)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCCCCEEEEE-HHHHCCCCCCC-EEEEEEEE
T ss_conf 49729998436888999999998669647864244038999999999757787489850-13313478864-55798860
Q ss_pred CC-----CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHH
Q ss_conf 89-----998880225555766654202657753999998388958999999999999
Q gi|254780130|r 137 LW-----WDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKST 189 (205)
Q Consensus 137 ~~-----~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~ 189 (205)
-+ -|-....|-+||-+ |-- ...|..|-=...+|+.+.|-++-+++.-
T Consensus 523 ADKeGFLRse~SLIQtIGRAA-----RN~-~GkvIlYAD~iT~sM~~Ai~ET~RRR~i 574 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAA-----RNV-NGKVILYADKITDSMQKAIDETERRREI 574 (663)
T ss_pred CCCCCCCCCCCHHHHHHHHHH-----HCC-CCEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 685444345325999987886-----357-9739997101149999999988889999
No 129
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=67.61 E-value=9.3 Score=18.19 Aligned_cols=72 Identities=21% Similarity=0.183 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHHHHC--CCCCEEEHHHHHHHHHHHHHHHHCCCC----HH------HHHHHHHHHHCC-CCCEEEECHHH
Q ss_conf 723433499998614--899711057899999998765304778----23------489999997278-98699972144
Q gi|254780130|r 52 HDEKIKALEVIIEKA--NAAPIIVAYHFNSDLARLQKAFPQGRT----LD------KDPCTIQEWNEG-KIPLLFAHPAS 118 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~~--~~~kviVf~~f~~~l~~l~~~~~~~~~----~~------~r~~~i~~f~~~-~~~Vll~~~~a 118 (205)
...|.+++.+-+.+. .|+||+|-+...+.=+.|...|..... .+ .++..|=.. .| .-.|.+++- .
T Consensus 406 ~~~K~~Av~~ei~~~h~~GqPVLvGT~SVe~SE~ls~~L~~~gi~h~vLNAk~~n~~~EA~IiA~-AG~~gaVTIATN-M 483 (891)
T CHL00122 406 EYSKWKAIADECFDMHKIGRPILVGTTSVEKSELLSQLLEEYQLPHNLLNAKPENVKRESEIIAQ-AGRKGAITIATN-M 483 (891)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHH-CCCCCCEEEECC-C
T ss_conf 99999999999999996799989834655889999999997478622023884307899999995-699993897155-5
Q ss_pred HHHHHHH
Q ss_conf 3233224
Q gi|254780130|r 119 CGHGLNL 125 (205)
Q Consensus 119 ~g~GlnL 125 (205)
||-|.+.
T Consensus 484 AGRGTDI 490 (891)
T CHL00122 484 AGRGTDI 490 (891)
T ss_pred CCCCCCE
T ss_conf 6898784
No 130
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=66.24 E-value=10 Score=18.03 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=46.6
Q ss_pred HCCCCCEEEHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH-HCCEEEEEC
Q ss_conf 1489971105789999999876530477-------82348999999727898699972144323322432-067589726
Q gi|254780130|r 65 KANAAPIIVAYHFNSDLARLQKAFPQGR-------TLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY-GGNILVFFS 136 (205)
Q Consensus 65 ~~~~~kviVf~~f~~~l~~l~~~~~~~~-------~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~-a~~~vI~~~ 136 (205)
...|.-.+.|+.+. .+..+...+.... ..+.+....++|+.++..||+++ .+--+|+++.- +...+|..-
T Consensus 645 ~~~g~~LVLFTS~~-~l~~v~~~L~~~~~~~L~Qg~~gs~~~l~~rF~~~~~siLlGt-~SFWEGVDlpG~~L~~vVI~k 722 (820)
T PRK07246 645 QEGQPILVLFNSKK-HLLAVSDYLDQWQVSHLAQEKNGTAYNIKKRFDRGEQTILLGL-GSFWEGVDFIQADRMIEVITR 722 (820)
T ss_pred HCCCCEEEEECHHH-HHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEC-CCCCCCCCCCCCCEEEEEEEE
T ss_conf 74999999953099-9999999985379977886797679999999984899699976-676466448998779999886
Q ss_pred CCCC
Q ss_conf 8999
Q gi|254780130|r 137 LWWD 140 (205)
Q Consensus 137 ~~~n 140 (205)
+||.
T Consensus 723 LPF~ 726 (820)
T PRK07246 723 LPFD 726 (820)
T ss_pred CCCC
T ss_conf 9999
No 131
>KOG0329 consensus
Probab=63.18 E-value=3.7 Score=20.43 Aligned_cols=65 Identities=15% Similarity=0.264 Sum_probs=45.3
Q ss_pred ECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHH
Q ss_conf 72144323322432067589726899988802255557666542026577539999983889589999999999
Q gi|254780130|r 114 AHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTK 187 (205)
Q Consensus 114 ~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K 187 (205)
+.+..-|-|++.. ..|+++.||.|-++..|.-..+| |-|+|-+.-. +.+++.. -|..|+.....+
T Consensus 303 vat~lfgrgmdie-rvNi~~NYdmp~~~DtYlHrv~r-----AgrfGtkgla--itfvs~e-~da~iLn~vqdR 367 (387)
T KOG0329 303 VATDLFGRGMDIE-RVNIVFNYDMPEDSDTYLHRVAR-----AGRFGTKGLA--ITFVSDE-NDAKILNPVQDR 367 (387)
T ss_pred HHHHHHCCCCCCC-CCEEEECCCCCCCCHHHHHHHHH-----HHCCCCCCCE--EEHHCCH-HHHHHHCHHHHH
T ss_conf 7766404666733-22023226898871278887624-----3035655520--1000111-267774316676
No 132
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=57.21 E-value=15 Score=17.10 Aligned_cols=68 Identities=15% Similarity=0.090 Sum_probs=42.4
Q ss_pred HHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE------EECCCCCHH-----HHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 48999999727898699972144323322432067589------726899988-----8022555576665420265775
Q gi|254780130|r 96 KDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV------FFSLWWDLE-----EHQQMIERIGVTRQRQAGFKRA 164 (205)
Q Consensus 96 ~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI------~~~~~~n~~-----~~~Qa~~Ri~~~r~hR~GQ~~~ 164 (205)
.-+...+.|.+|+.++++.+. .-.-|.|+..-.-+.| .++++|.+. .+.|+-|| |.|-+-...
T Consensus 522 ~~~~~l~~~~~ge~dILiGTQ-miaKG~~fp~vtLVgvl~aD~~L~~~DfRAsEr~fqll~QvaGR-----AgR~~~~G~ 595 (730)
T COG1198 522 ALEDLLDQFANGEADILIGTQ-MIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGR-----AGRAGKPGE 595 (730)
T ss_pred HHHHHHHHHHCCCCCEEECCH-HHHCCCCCCCCEEEEEEECHHHHCCCCCCHHHHHHHHHHHHHHH-----HCCCCCCCE
T ss_conf 689999997579988663416-66427886663189999631431588843578999999999755-----326788986
Q ss_pred EEEEE
Q ss_conf 39999
Q gi|254780130|r 165 VFVYY 169 (205)
Q Consensus 165 v~v~~ 169 (205)
|.+=.
T Consensus 596 VvIQT 600 (730)
T COG1198 596 VVIQT 600 (730)
T ss_pred EEEEE
T ss_conf 99996
No 133
>KOG4150 consensus
Probab=56.72 E-value=15 Score=17.05 Aligned_cols=84 Identities=11% Similarity=0.144 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEE
Q ss_conf 47782348999999727898699972144323322432067589726899988802255557666542026577539999
Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYY 169 (205)
Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~ 169 (205)
+|-...-|.++.++.-.|+..-++++ .|.-.||+.- .-+.+++..-|+|.+.+.|--||- -|. .++..-.+
T Consensus 565 GGY~A~DRRKIE~~~F~G~L~giIaT-NALELGIDIG-~LDAVl~~GFP~S~aNl~QQ~GRA-----GRR--Nk~SLavy 635 (1034)
T KOG4150 565 GGYIAEDRRKIESDLFGGKLCGIIAT-NALELGIDIG-HLDAVLHLGFPGSIANLWQQAGRA-----GRR--NKPSLAVY 635 (1034)
T ss_pred CCCCHHHHHHHHHHHHCCEEEEEEEC-CHHHHCCCCC-CCCEEEECCCCCHHHHHHHHHHHC-----CCC--CCCCEEEE
T ss_conf 77535567777888517826899853-6074442435-643689826850677899872110-----156--89844899
Q ss_pred EEECCCHHHHHHH
Q ss_conf 9838895899999
Q gi|254780130|r 170 LIAQNTIDELVLQ 182 (205)
Q Consensus 170 l~~~~tiEe~i~~ 182 (205)
....+.+|+.-+.
T Consensus 636 va~~~PVDQ~Y~~ 648 (1034)
T KOG4150 636 VAFLGPVDQYYMS 648 (1034)
T ss_pred EEECCCCHHHHHC
T ss_conf 9742761277661
No 134
>TIGR01807 CM_P2 chorismate mutase; InterPro: IPR010957 This entry primarily represents the chorismate mutase domain of the gamma and beta and epsilonproteobacterial 'P-protein', which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.; GO: 0004106 chorismate mutase activity, 0009094 L-phenylalanine biosynthetic process, 0005737 cytoplasm.
Probab=56.49 E-value=15 Score=17.13 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=15.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 895899999999999999999999986
Q gi|254780130|r 174 NTIDELVLQRLRTKSTIQDLLLNALKK 200 (205)
Q Consensus 174 ~tiEe~i~~~l~~K~~~~~~~l~~~~~ 200 (205)
||||.+|+++|.++...+.. ++.+|+
T Consensus 9 DaiD~~ILdLL~eRA~~a~~-vGElK~ 34 (79)
T TIGR01807 9 DAIDDRILDLLSERAKLAQA-VGELKG 34 (79)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHC
T ss_conf 33899999989999999999-876520
No 135
>TIGR00963 secA preprotein translocase, SecA subunit; InterPro: IPR000185 Secretion across the inner membrane in some Gram-negative bacteria occurs via the preprotein translocase pathway. Proteins are produced in the cytoplasm as precursors, and require a chaperone subunit to direct them to the translocase component. . From there, the mature proteins are either targeted to the outer membrane, or remain as periplasmic proteins. The translocase protein subunits are encoded on the bacterial chromosome. The translocase itself comprises 7 proteins, including a chaperone protein (SecB), an ATPase (SecA), an integral membrane complex (SecCY, SecE and SecG), and two additional membrane proteins that promote the release of the mature peptide into the periplasm (SecD and SecF) . The chaperone protein SecB is a highly acidic homotetrameric protein that exists as a "dimer of dimers" in the bacterial cytoplasm. SecB maintains preproteins in an unfolded state after translation, and targets these to the peripheral membrane protein ATPase SecA for secretion . SecA is a cytoplasmic protein of 800 to 960 amino acid residues. Homologs of secA are also encoded in the chloroplast genome of some algae as well as in the nuclear genome of plants . It could be involved in the intraorganellar protein transport into thylakoids.; GO: 0005524 ATP binding, 0006605 protein targeting, 0006886 intracellular protein transport.
Probab=49.04 E-value=20 Score=16.35 Aligned_cols=111 Identities=20% Similarity=0.146 Sum_probs=64.9
Q ss_pred HHHCCCCEEHHHHHHHHHHHHHH------CCCCHHCCC-CCCCCCCCHHHHHHHHH-HHHHC-CCCCEEEHHHHHHHHHH
Q ss_conf 97357832099999999999886------077000344-56542057234334999-98614-89971105789999999
Q gi|254780130|r 13 CDLQGENIEAFNSASKTVKCLQL------ANGAVYYDE-EKHWKEVHDEKIKALEV-IIEKA-NAAPIIVAYHFNSDLAR 83 (205)
Q Consensus 13 ~~~~~~~i~a~~~~~~~~kL~Ql------~~g~~~~d~-~~~~~~~~~~Kl~~l~~-ii~~~-~~~kviVf~~f~~~l~~ 83 (205)
-.|-|-+-||.+-.....+--.| +|-|+...+ +-.+..-...|.+|+.+ +.+-. .|+||+|=|--.+.=|.
T Consensus 371 ~KLsGMTGTA~TE~~EF~~IYnL~Vv~vPTNrp~~R~D~~DlvY~te~~Kw~Av~~e~~~~h~~GqPvLvGT~svE~SE~ 450 (904)
T TIGR00963 371 EKLSGMTGTAKTEEEEFEKIYNLEVVVVPTNRPVIRKDLPDLVYKTEEEKWKAVVDEIKEIHAKGQPVLVGTTSVEKSEL 450 (904)
T ss_pred HHHCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHH
T ss_conf 65446877568999984045775135516677234467777346476889999999999987468987775221777899
Q ss_pred HHHHHHCCCCH----------HHHHHHHHHHHCCCCCEEEECHHHHHHHHH
Q ss_conf 87653047782----------348999999727898699972144323322
Q gi|254780130|r 84 LQKAFPQGRTL----------DKDPCTIQEWNEGKIPLLFAHPASCGHGLN 124 (205)
Q Consensus 84 l~~~~~~~~~~----------~~r~~~i~~f~~~~~~Vll~~~~a~g~Gln 124 (205)
|.+.|....+. .+|+..|=..---+.-|.|+|- .||=|.+
T Consensus 451 LS~lL~~~~I~H~VLNAKPENh~rEAeIia~AG~kGAVTIATN-MAGRGTD 500 (904)
T TIGR00963 451 LSKLLKERGIPHNVLNAKPENHEREAEIIAQAGRKGAVTIATN-MAGRGTD 500 (904)
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEC-CCCCCCC
T ss_conf 9999985789812247874467789999996088864167624-7877645
No 136
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=47.70 E-value=21 Score=16.23 Aligned_cols=104 Identities=9% Similarity=0.097 Sum_probs=54.8
Q ss_pred HCCCCCEEEHHHHHHHHHHHHHHHHCC-------------CCHHHHHHHHHHHHC-CCCCEEEECHHHHHHHHHHHHHCC
Q ss_conf 148997110578999999987653047-------------782348999999727-898699972144323322432067
Q gi|254780130|r 65 KANAAPIIVAYHFNSDLARLQKAFPQG-------------RTLDKDPCTIQEWNE-GKIPLLFAHPASCGHGLNLQYGGN 130 (205)
Q Consensus 65 ~~~~~kviVf~~f~~~l~~l~~~~~~~-------------~~~~~r~~~i~~f~~-~~~~Vll~~~~a~g~GlnL~~a~~ 130 (205)
+.+|. |+||-.-..++......+.+. .+...+.. -|+. +.-+|++ +++.|-.+||.. .-.
T Consensus 284 ~~~Gd-ILVFLpG~~EI~~~~~~L~~~~~~~~~ilPL~s~ls~~eQ~~---vF~p~~~RkIVl-aTNIAETSlTIp-~I~ 357 (1295)
T PRK11131 284 ESPGD-ILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNR---VFQSHSGRRIVL-ATNVAETSLTVP-GIK 357 (1295)
T ss_pred CCCCC-EEEECCCHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHHHH---HHCCCCCCEEEE-ECCCCCCCCEEC-CEE
T ss_conf 89987-798669799999999998614898876986557899999999---848899733898-405200010005-648
Q ss_pred EEE--------EECCCCCHHH-----HHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHH
Q ss_conf 589--------7268999888-----0225555766654202657753999998388958
Q gi|254780130|r 131 ILV--------FFSLWWDLEE-----HQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTID 177 (205)
Q Consensus 131 ~vI--------~~~~~~n~~~-----~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiE 177 (205)
.|| .|++.-+... .-||...+ |+.|-|...+-.+|+|.++...+
T Consensus 358 yVIDsG~~k~~~y~~~~~~~~L~~~~iSqAsA~Q---R~GRaGR~~~G~C~RLyse~~~~ 414 (1295)
T PRK11131 358 YVIDPGTARISRYSYRTKVQRLPIEPISQASANQ---RKGRCGRVSEGICIRLYSEDDFL 414 (1295)
T ss_pred EEEECCCEEEEEECCCCCCCEEEEEEECHHHHHH---HHHHHCCCCCCEEEEEECHHHHH
T ss_conf 9993784010047577786646678701656987---50540788995399983598885
No 137
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=44.52 E-value=24 Score=15.94 Aligned_cols=72 Identities=24% Similarity=0.329 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECC---------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf 89999997278986999721443233224320675897268---------999888022555576665420265775399
Q gi|254780130|r 97 DPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSL---------WWDLEEHQQMIERIGVTRQRQAGFKRAVFV 167 (205)
Q Consensus 97 r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~---------~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v 167 (205)
+.....-|+.|-++|++++. .-+.|+|+. +.+++|.+. +.+|..|.|--||. -|-|+...-.+
T Consensus 459 K~~vE~Lfq~GLvkvvFaTe-T~s~GiNmP--artvv~~~l~K~dG~~~r~L~~gEy~QmsGRA-----GRRGlD~~G~v 530 (1041)
T COG4581 459 KELVEELFQEGLVKVVFATE-TFAIGINMP--ARTVVFTSLSKFDGNGHRWLSPGEYTQMSGRA-----GRRGLDVLGTV 530 (1041)
T ss_pred HHHHHHHHHCCCEEEEEEHH-HHHHHCCCC--CCCEEEEEEEEECCCCEEECCHHHHHHHHHHH-----CCCCCCCCCEE
T ss_conf 99999998604305775333-464015784--00135465577548853565815777754443-----01556546549
Q ss_pred EEEEECCCH
Q ss_conf 999838895
Q gi|254780130|r 168 YYLIAQNTI 176 (205)
Q Consensus 168 ~~l~~~~ti 176 (205)
..+....-.
T Consensus 531 I~~~~~~~~ 539 (1041)
T COG4581 531 IVIEPPFES 539 (1041)
T ss_pred EEECCCCCC
T ss_conf 995578878
No 138
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=40.33 E-value=28 Score=15.57 Aligned_cols=73 Identities=15% Similarity=0.159 Sum_probs=44.1
Q ss_pred CHHHHHHHHHHHHH--CCCCCEEEHHHHHHHHHHHHHHHHCCCC----HH------HHHHHHHHHHCCCCCEEEECHHHH
Q ss_conf 72343349999861--4899711057899999998765304778----23------489999997278986999721443
Q gi|254780130|r 52 HDEKIKALEVIIEK--ANAAPIIVAYHFNSDLARLQKAFPQGRT----LD------KDPCTIQEWNEGKIPLLFAHPASC 119 (205)
Q Consensus 52 ~~~Kl~~l~~ii~~--~~~~kviVf~~f~~~l~~l~~~~~~~~~----~~------~r~~~i~~f~~~~~~Vll~~~~a~ 119 (205)
...|++++.+-+.+ ..|+||+|-+.-.+.=+.|...|..... .+ .++..|=..---.-.|.+++- .|
T Consensus 426 ~~~K~~Av~~ei~~~~~~gqPVLVGT~SVe~SE~ls~lL~~~gi~h~VLNAk~~n~~~EAeIIA~AG~~gaVTIATN-MA 504 (946)
T PRK12902 426 EIAKWRAVANETAEMHKQGRPVLVGTTSVEKSELLSALLAEQGIPHNLLNAKPENVEREAEIVAQAGRKGAVTIATN-MA 504 (946)
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHCCCCCCEEEECC-CC
T ss_conf 99999999999999975899889972757989999999985588620325786442789999994699996897454-46
Q ss_pred HHHHHH
Q ss_conf 233224
Q gi|254780130|r 120 GHGLNL 125 (205)
Q Consensus 120 g~GlnL 125 (205)
|-|.+.
T Consensus 505 GRGTDI 510 (946)
T PRK12902 505 GRGTDI 510 (946)
T ss_pred CCCCCE
T ss_conf 898695
No 139
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=36.98 E-value=32 Score=15.27 Aligned_cols=56 Identities=13% Similarity=0.145 Sum_probs=35.2
Q ss_pred HHCCCCHHHHHHHHHHHH-CCCCCEEEECHHHHHHHHHHHH-HCCEEEEECCCCCHHHH
Q ss_conf 304778234899999972-7898699972144323322432-06758972689998880
Q gi|254780130|r 88 FPQGRTLDKDPCTIQEWN-EGKIPLLFAHPASCGHGLNLQY-GGNILVFFSLWWDLEEH 144 (205)
Q Consensus 88 ~~~~~~~~~r~~~i~~f~-~~~~~Vll~~~~a~g~GlnL~~-a~~~vI~~~~~~n~~~~ 144 (205)
|.++....+...+++.|. +.+.-||++. ..-++|||+.. .+..+|...+|+-+-..
T Consensus 27 f~E~~~~~~~~~~l~~f~~~~~~avL~~v-g~~sEGIDf~~d~~r~vii~glPfp~~~d 84 (141)
T smart00492 27 LVQGEDGKETGKLLEKYVEACENAILLAT-ARFSEGVDFPGDYLRAVIIDGLPFPYPDS 84 (141)
T ss_pred EECCCCCCHHHHHHHHHHHHCCCEEEEEE-CCCCCCEECCCCCEEEEEEECCCCCCCCC
T ss_conf 98699922499999999983688099970-34334420598455699994478899998
No 140
>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase; InterPro: IPR006551 These proteins catalyse the dephosphorylation of DNA 3'-phosphates. It is believed that this activity is important for the repair of single-strand breaks in DNA caused by radiation or oxidative damage. This region is often , , but not always linked to a DNA 5'-kinase domain , . As is common in this superfamily, DNA 3-phosphatase is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the usual site which may indicate a slightly different fold in this region..
Probab=35.58 E-value=15 Score=16.99 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=28.2
Q ss_pred HHCCCCCCCCC-CCH---HHHHHHHHHHHHCCCCCEEEHHHHH
Q ss_conf 00344565420-572---3433499998614899711057899
Q gi|254780130|r 40 VYYDEEKHWKE-VHD---EKIKALEVIIEKANAAPIIVAYHFN 78 (205)
Q Consensus 40 ~~~d~~~~~~~-~~~---~Kl~~l~~ii~~~~~~kviVf~~f~ 78 (205)
++-.+..+|.. .+. +||..|.++++..+|.+++||||-.
T Consensus 39 v~p~~~~dW~~i~~~~~p~kL~~LCniid~~~gY~iVIftNQ~ 81 (239)
T TIGR01664 39 VFPKDASDWRFILFKEVPEKLKELCNIIDEDEGYKIVIFTNQS 81 (239)
T ss_pred CCCCCCCCCEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 7888702341412554147999885441035870799987146
No 141
>pfam10879 DUF2674 Protein of unknown function (DUF2674). This family of proteins with unknown function appears to be conserved to Rickettsia spp.
Probab=34.52 E-value=30 Score=15.37 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=21.5
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHHCC
Q ss_conf 48997110578999999987653047
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFPQG 91 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~~~ 91 (205)
.+.++||-|+.++.+++++.++..+|
T Consensus 3 nptqkvisfsehkadierikkaieeg 28 (67)
T pfam10879 3 NPTQKVISFSEHKADIERIKKAIEEG 28 (67)
T ss_pred CCCCCEEEHHHHHHHHHHHHHHHHHC
T ss_conf 95200455223160499999998607
No 142
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B; InterPro: IPR013484 MoaB is thought to be involved in molybdopterin biosynthesis, though its exact role is not known. Structural studies of this polypeptide suggest that it may play a role in substrate-shuttling during biosynthesis . MoaB was capable of binding GTP, and it was suggested that the putative active site could also bind precursor Z and/or molybdenum. Potential protein interaction domains were also found, implying that MoaB may play a transport and/or storage role in molybdopterin biosynthesis. .
Probab=34.12 E-value=31 Score=15.29 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=7.8
Q ss_pred HCCCCCEEEECHHHHHHHHH
Q ss_conf 27898699972144323322
Q gi|254780130|r 105 NEGKIPLLFAHPASCGHGLN 124 (205)
Q Consensus 105 ~~~~~~Vll~~~~a~g~Gln 124 (205)
-++.++|+|.+ ||.|+|
T Consensus 60 Ad~~VqVil~T---GGTGfT 76 (163)
T TIGR02667 60 ADPAVQVILIT---GGTGFT 76 (163)
T ss_pred CCCCCCEEEEC---CCCCCC
T ss_conf 89865568871---882346
No 143
>PRK05580 primosome assembly protein PriA; Validated
Probab=33.09 E-value=37 Score=14.91 Aligned_cols=66 Identities=14% Similarity=0.159 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEE-------ECCCCCHH-----HHHHHHHHHHHHHHHCCCCC
Q ss_conf 3489999997278986999721443233224320675897-------26899988-----80225555766654202657
Q gi|254780130|r 95 DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVF-------FSLWWDLE-----EHQQMIERIGVTRQRQAGFK 162 (205)
Q Consensus 95 ~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~-------~~~~~n~~-----~~~Qa~~Ri~~~r~hR~GQ~ 162 (205)
+.-+..+..|.+++..+++++ +...-|++... -..++. +.|+|.+. ...|+.||. .|-...
T Consensus 490 ~~~~~~~~~~~~~~~dIlvGT-qmiakG~df~~-v~lv~vldaD~~l~~pd~ra~E~~~qll~qvagra-----gr~~~~ 562 (699)
T PRK05580 490 GALEQLLEDFARGEADILVGT-QMLAKGHDFPN-VTLVGVLDADTGLFSPDFRAAERTFQLLTQVAGRA-----GRAEKP 562 (699)
T ss_pred CCHHHHHHHHHCCCCCEEECC-CCCCCCCCCCC-EEEEEEECHHHHCCCCCCCHHHHHHHHHHHHHHHH-----CCCCCC
T ss_conf 316889999746898789777-33455677776-26998732265354888347999999999998765-----567889
Q ss_pred CCEEE
Q ss_conf 75399
Q gi|254780130|r 163 RAVFV 167 (205)
Q Consensus 163 ~~v~v 167 (205)
..|.+
T Consensus 563 g~vii 567 (699)
T PRK05580 563 GEVLI 567 (699)
T ss_pred CEEEE
T ss_conf 87999
No 144
>TIGR00095 TIGR00095 putative methyltransferase; InterPro: IPR004398 This is a family of conserved hypothetical proteins, which includes a putative methylase..
Probab=32.67 E-value=22 Score=16.16 Aligned_cols=23 Identities=9% Similarity=0.232 Sum_probs=19.5
Q ss_pred CEEEEECCCCCHHH--HHHHHHHHH
Q ss_conf 75897268999888--022555576
Q gi|254780130|r 130 NILVFFSLWWDLEE--HQQMIERIG 152 (205)
Q Consensus 130 ~~vI~~~~~~n~~~--~~Qa~~Ri~ 152 (205)
.-+||+||||+... +.+...=|.
T Consensus 133 ~d~iylDPPf~~~~ad~~~~l~l~~ 157 (210)
T TIGR00095 133 FDIIYLDPPFNTGLADLEAILELLG 157 (210)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 1478714888876103799999999
No 145
>KOG0442 consensus
Probab=32.08 E-value=38 Score=14.81 Aligned_cols=60 Identities=15% Similarity=0.268 Sum_probs=40.0
Q ss_pred CCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHH-HHHHHHHHHHHHHH
Q ss_conf 675897268999888022555576665420265775399999838895899999-99999999999999
Q gi|254780130|r 129 GNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQ-RLRTKSTIQDLLLN 196 (205)
Q Consensus 129 ~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~-~l~~K~~~~~~~l~ 196 (205)
-+.+|+|+++-+ ++.+|.+++|.|.+ +...||.+...+|+||.-|- .+++-+.-.+.+..
T Consensus 545 P~yvi~y~~~~~------~vRqiEvYka~~p~--~~lkVYfl~y~~S~EeQ~yltSirREk~sFe~LIr 605 (892)
T KOG0442 545 PRYVIMYESDLT------FVRQIEVYKATRPF--RSLKVYFLYYGESTEEQRYLTSIRREKASFEKLIR 605 (892)
T ss_pred CCEEEEECCCCC------CEEEEEEEECCCCC--CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 726999837997------30355532004777--77528999836836899999888775777999975
No 146
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=30.48 E-value=41 Score=14.65 Aligned_cols=78 Identities=13% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHCCCCCEEEHHHHHHHHHHHHHHHHCC---C----CHHHHHHHHH----HHHCCCCCEEEECHHHHHHHHHHHH-
Q ss_conf 99986148997110578999999987653047---7----8234899999----9727898699972144323322432-
Q gi|254780130|r 60 EVIIEKANAAPIIVAYHFNSDLARLQKAFPQG---R----TLDKDPCTIQ----EWNEGKIPLLFAHPASCGHGLNLQY- 127 (205)
Q Consensus 60 ~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~~---~----~~~~r~~~i~----~f~~~~~~Vll~~~~a~g~GlnL~~- 127 (205)
..+++...| -.+.|+.+. .++.+...+... . ....|...++ +|++++..||+++ .+-.+|+++.-
T Consensus 528 ~~~~~~~~g-~LVLFtS~~-~l~~v~~~l~~~~~~~ll~Qg~~~r~~ll~~f~~~~~~~~~svLlGt-~SFwEGVD~pG~ 604 (697)
T PRK11747 528 PELLEGHKG-SLVLFSSRR-QMQKVADLLPGDLRLLLLVQGEQPRQELLEKHKKRVDEGEGSVLFGL-QSFAEGLDLPGD 604 (697)
T ss_pred HHHHHHCCC-EEEEECHHH-HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCEECCCC
T ss_conf 999985698-499950199-99999998766348838995686599999999998616898299967-531266136987
Q ss_pred HCCEEEEECCCCC
Q ss_conf 0675897268999
Q gi|254780130|r 128 GGNILVFFSLWWD 140 (205)
Q Consensus 128 a~~~vI~~~~~~n 140 (205)
+...+|..-+||.
T Consensus 605 ~L~~VII~kLPF~ 617 (697)
T PRK11747 605 YLTQVIITKIPFA 617 (697)
T ss_pred CEEEEEEECCCCC
T ss_conf 8789999748999
No 147
>TIGR01169 rplA_bact ribosomal protein L1; InterPro: IPR005878 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites , . About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many of ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome , . Ribosomal protein L1 is the largest protein from the large ribosomal subunit. In Escherichia coli, L1 is known to bind to the 23S rRNA. This model describe s bacterial and chloroplast ribosomal protein L1. Most mitochondrial L1 sequences are sufficiently divergent to be the contained in a different entry (IPR005879 from INTERPRO).; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0015934 large ribosomal subunit.
Probab=27.84 E-value=45 Score=14.39 Aligned_cols=100 Identities=16% Similarity=0.099 Sum_probs=52.8
Q ss_pred CCEEEHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC--CCCEEEECHHHHHH----HHHHHHHCCEEEEECC--CCC
Q ss_conf 971105789999999876530477823489999997278--98699972144323----3224320675897268--999
Q gi|254780130|r 69 APIIVAYHFNSDLARLQKAFPQGRTLDKDPCTIQEWNEG--KIPLLFAHPASCGH----GLNLQYGGNILVFFSL--WWD 140 (205)
Q Consensus 69 ~kviVf~~f~~~l~~l~~~~~~~~~~~~r~~~i~~f~~~--~~~Vll~~~~a~g~----GlnL~~a~~~vI~~~~--~~n 140 (205)
-+|+|||.=... .++..-|...=.-.+.+++-+.| ++.|+++||.+.+. |==| +- +=.+-+| --=
T Consensus 71 ~RVaVfa~G~~~----~eA~~AGAD~VG~~DLie~Ik~G~~dFDV~IATPDmM~~VGkLG~iL--GP-RGLMPNPK~GTV 143 (227)
T TIGR01169 71 VRVAVFAKGEKA----KEAKAAGADYVGSDDLIEKIKKGWLDFDVVIATPDMMRKVGKLGRIL--GP-RGLMPNPKTGTV 143 (227)
T ss_pred EEEEEECCCHHH----HHHHHCCCEEECCHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHC--CC-CCCCCCCCCCCC
T ss_conf 589997164348----88987098044488799999558985025882757768876331004--78-884753596652
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC-----CCEEEEEEEECCCHHHHHH
Q ss_conf 8880225555766654202657-----7539999983889589999
Q gi|254780130|r 141 LEEHQQMIERIGVTRQRQAGFK-----RAVFVYYLIAQNTIDELVL 181 (205)
Q Consensus 141 ~~~~~Qa~~Ri~~~r~hR~GQ~-----~~v~v~~l~~~~tiEe~i~ 181 (205)
..+-.+|+.-. +-||. +.=+|+-.+.+=|.|+.=+
T Consensus 144 T~dva~Av~~~------K~G~vefR~DK~G~iH~~~GK~SF~~~~L 183 (227)
T TIGR01169 144 TADVAKAVKEA------KKGRVEFRADKAGNIHAPIGKVSFDEEKL 183 (227)
T ss_pred CHHHHHHHHHH------HCCCEEEEECCCEEEEEEECCCCCCHHHH
T ss_conf 24379999987------27950465158515877752666888999
No 148
>pfam03602 Cons_hypoth95 Conserved hypothetical protein 95.
Probab=26.39 E-value=41 Score=14.65 Aligned_cols=22 Identities=18% Similarity=0.182 Sum_probs=18.8
Q ss_pred EEEEECCCCCHHHHHHHHHHHH
Q ss_conf 5897268999888022555576
Q gi|254780130|r 131 ILVFFSLWWDLEEHQQMIERIG 152 (205)
Q Consensus 131 ~vI~~~~~~n~~~~~Qa~~Ri~ 152 (205)
-+||+||||+...+......+.
T Consensus 115 diIF~DPPY~~~~~~~~l~~l~ 136 (181)
T pfam03602 115 DLVFLDPPYAKGLIEEALELLA 136 (181)
T ss_pred CEEECCCCCCCHHHHHHHHHHH
T ss_conf 7663599754206999999999
No 149
>pfam08129 Antimicrobial17 Alpha/beta enterocin family. This family consists of the alpha and beta enterocins and lactococcin G peptides. These peptides have some antimicrobial properties; they inhibit the growth of Enterococcus spp. and a few other gram-positive bacteria. These peptides act as pore- forming toxins that create cell membrane channels through a barrel-stave mechanism and thus produce an ionic imbalance in the cell. These family of antimicrobial peptides belong to the class II group of bacteriocin.
Probab=25.39 E-value=49 Score=14.19 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=15.4
Q ss_pred CHHHHHHHHHHHHHHCCCCE
Q ss_conf 93589999999997357832
Q gi|254780130|r 1 MKQYHKFQRELYCDLQGENI 20 (205)
Q Consensus 1 ~k~Y~~l~~~~~~~~~~~~i 20 (205)
||+|+++.+..+.+.-+++-
T Consensus 1 mkqyk~l~ekelr~~vgges 20 (57)
T pfam08129 1 MKQYKVLNEKEMKKPIGGES 20 (57)
T ss_pred CCHHHHHHHHHHHHCCCCCC
T ss_conf 90578865999975347722
No 150
>PRK09694 hypothetical protein; Provisional
Probab=24.33 E-value=53 Score=14.02 Aligned_cols=102 Identities=19% Similarity=0.191 Sum_probs=56.5
Q ss_pred HHHHHH-CCCCCEEEHHHHHHHHHHHHHHH----HCCCC---------H-H---HHHHHHHHHH-CCC---CCEEEECHH
Q ss_conf 999861-48997110578999999987653----04778---------2-3---4899999972-789---869997214
Q gi|254780130|r 60 EVIIEK-ANAAPIIVAYHFNSDLARLQKAF----PQGRT---------L-D---KDPCTIQEWN-EGK---IPLLFAHPA 117 (205)
Q Consensus 60 ~~ii~~-~~~~kviVf~~f~~~l~~l~~~~----~~~~~---------~-~---~r~~~i~~f~-~~~---~~Vll~~~~ 117 (205)
..+++. .+|..|+|.+|-......+-..+ ..... . + ..+...+.|. +++ .+|++++ +
T Consensus 552 ~~l~~~~~~G~~v~vI~NTV~rAq~~y~~L~~~~~~~~~v~L~HsRF~~~DR~~~E~~vl~~~Gk~~~r~~g~IlVaT-Q 630 (878)
T PRK09694 552 ERMIAAANAGAQVCVICNLVDDAQVCYQRLKELNNTQVDIDLFHARFTFNDRREKENRVISNFGKNGKRNVGRILVAT-Q 630 (878)
T ss_pred HHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEC-C
T ss_conf 999999978995999938899999999999985289987799868887766999999999986889889998699977-3
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHH-HHHHHHHHHHHHH-HHCCC-CCCCEEE
Q ss_conf 4323322432067589726899988-8022555576665-42026-5775399
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLE-EHQQMIERIGVTR-QRQAG-FKRAVFV 167 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~-~~~Qa~~Ri~~~r-~hR~G-Q~~~v~v 167 (205)
..-..|++. .+.+| -|+ -|. ...|+.||+.|+. ..|+. ...|+.+
T Consensus 631 VvEQSLDiD--fD~li-TDL--APiDlLlQR~GRLhRH~R~~RP~g~~~P~~~ 678 (878)
T PRK09694 631 VVEQSLDLD--FDWLI-TQH--CPADLLFQRMGRLHRHHRKYRPAGFEIPVAT 678 (878)
T ss_pred EEEEEECCC--CCHHH-CCC--CCHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
T ss_conf 332430335--33011-046--8699999874232058998888777787699
No 151
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=22.68 E-value=21 Score=16.20 Aligned_cols=63 Identities=13% Similarity=0.268 Sum_probs=32.9
Q ss_pred HHCCCCHHHHHHHHHHHHCC-C--CCEEEECHH-HHHHHHHHHH-HCCEEEEECCCCCHHHHHHHHHH
Q ss_conf 30477823489999997278-9--869997214-4323322432-06758972689998880225555
Q gi|254780130|r 88 FPQGRTLDKDPCTIQEWNEG-K--IPLLFAHPA-SCGHGLNLQY-GGNILVFFSLWWDLEEHQQMIER 150 (205)
Q Consensus 88 ~~~~~~~~~r~~~i~~f~~~-~--~~Vll~~~~-a~g~GlnL~~-a~~~vI~~~~~~n~~~~~Qa~~R 150 (205)
|.++....++....+.|... + --+|++... .-++|+++.. .+..+|....|+-+-...+-..|
T Consensus 24 f~E~~~~~~~~~~l~~f~~~~~~~gaiL~~v~~Gk~sEGiDf~~~~~r~viivglP~p~~~d~~~~~r 91 (142)
T smart00491 24 FIEGKDSGETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFPNPDSPILRAR 91 (142)
T ss_pred EEECCCHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEEECCCCCCEEEEEEEECCCCCCCCHHHHHH
T ss_conf 99589835799999999986236981999984415752150599776599997089999999999999
No 152
>KOG0795 consensus
Probab=21.32 E-value=27 Score=15.68 Aligned_cols=56 Identities=18% Similarity=0.207 Sum_probs=38.4
Q ss_pred HHHHHCCEEEEECC-------CCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 24320675897268-------999888022555576665420265775399999838895899999999999999
Q gi|254780130|r 124 NLQYGGNILVFFSL-------WWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTIQ 191 (205)
Q Consensus 124 nL~~a~~~vI~~~~-------~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~~ 191 (205)
-||. -+.-|+|.- --||+.|+.++.-++ |-| +..+++-.++||.|.+++..|....
T Consensus 151 CLQ~-LSrRIHyGKFVAEaKf~~~p~~Ye~aIkaqD-----~~~------lm~~lt~~~vEe~vkkRv~~Ka~~y 213 (262)
T KOG0795 151 CLQS-LSRRIHYGKFVAEAKFQANPEAYEKAIKAQD-----REG------LMKLLTFEAVEEKVKKRVEKKAETY 213 (262)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-----HHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999-9888552024446675219898999998863-----999------9998537889999999999999972
No 153
>pfam09445 Methyltransf_15 RNA cap guanine-N2 methyltransferase. RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe Tgs1 and Giardia lamblia Tgs2 catalyse methylation of the exocyclic N2 amine of 7-methylguanosine.
Probab=20.65 E-value=50 Score=14.17 Aligned_cols=15 Identities=20% Similarity=0.277 Sum_probs=7.6
Q ss_pred CCCEEEECHHHHHHH
Q ss_conf 986999721443233
Q gi|254780130|r 108 KIPLLFAHPASCGHG 122 (205)
Q Consensus 108 ~~~Vll~~~~a~g~G 122 (205)
...|++++|-.||-+
T Consensus 71 ~~DvVf~sPPWGGp~ 85 (165)
T pfam09445 71 PYDCVFLSPPWGGPS 85 (165)
T ss_pred CCCEEEECCCCCCCC
T ss_conf 755899779999988
Done!