HHsearch results for GI: 254780130 and protein with PDBid: 1hv8_A
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.22 E-value=1.4e-10 Score=76.80 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=85.8
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf 489971105789999999876530----------4778234899999972789869997214432332243206758972
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205)
..+.++|||++-....+.+.+.|. ++.....|..+.+.|.+++.+|++++ .+.+.|+|+. .++++|+|
T Consensus 236 ~~~~~~lIF~~~~~~~~~~~~~L~~~~~~~~~~h~~l~~~~r~~i~~~f~~g~~~vlVaT-~~l~~GiDip-~v~~Vi~~ 313 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIAT-DVMSRGIDVN-DLNCVINY 313 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEEC-TTHHHHCCCS-CCSEEEES
T ss_pred HCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHCCCCCEEEEEE-CHHHCCCCCC-CCCEEEEE
T ss_conf 068637999766477999999999759972544168856665321101016863189962-1212455677-88889996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHH
Q ss_conf 689998880225555766654202657753999998388958999999999
Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRT 186 (205)
Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~ 186 (205)
++|.|+..|.|..||. -|.|+...+ +.|+.++ |.+.++.+.+
T Consensus 314 ~~p~s~~~~iQ~~GR~-----gR~g~~g~~--i~~~~~~--~~~~~~~i~~ 355 (367)
T 1hv8_A 314 HLPQNPESYMHRIGRT-----GRAGKKGKA--ISIINRR--EYKKLRYIER 355 (367)
T ss_dssp SCCSCHHHHHHHSTTT-----CCSSSCCEE--EEEECTT--SHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHC-----CCCCCCEEE--EEEECHH--HHHHHHHHHH
T ss_conf 9998999999996356-----569895499--9997579--9999999999