HHsearch results for GI: 254780130 and protein with PDBid: 1yks_A
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=97.66 E-value=3e-05 Score=47.34 Aligned_cols=91 Identities=12% Similarity=0.014 Sum_probs=60.9
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC----H--HHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEE-------
Q ss_conf 899711057899999998765304778----2--348999999727898699972144323322432067589-------
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT----L--DKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILV------- 133 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~----~--~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI------- 133 (205)
.+.+++||++-..+.+.|.+.|..... . +......+.+.+++.+|++++ .+++.|+|| . ..+||
T Consensus 176 ~~gk~LVF~~s~~~~e~la~~L~~~g~~v~~lhg~~~~~~~~~~~~g~~~vvVaT-di~e~Gini-~-v~~VId~g~~~~ 252 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILAT-DIAEMGANL-C-VERVLDCRTAFK 252 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEES-SSTTCCTTC-C-CSEEEECCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHCCCEEEEEEC-CHHHCCCCC-C-CEEEEECCCCCC
T ss_conf 5898899989599999999999858981999879974887767553883299982-368636224-7-229997786321
Q ss_pred ------------EECCCCCHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf ------------72689998880225555766654202657753
Q gi|254780130|r 134 ------------FFSLWWDLEEHQQMIERIGVTRQRQAGFKRAV 165 (205)
Q Consensus 134 ------------~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v 165 (205)
.+..|-|++.+.|+.||. -|-|.+..+
T Consensus 253 ~~~~~~~~~~~~~~~~pis~as~~QR~GR~-----GR~~~~~~~ 291 (440)
T 1yks_A 253 PVLVDEGRKVAIKGPLRISASSAAQRRGRI-----GRNPNRDGD 291 (440)
T ss_dssp EEEETTTTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCE
T ss_pred CEEECCCCCEEEECCCCCCHHHHHHHHHCC-----CCCCCCCCE
T ss_conf 025458876798067689989998641067-----888888862