HHsearch results for GI: 254780130 and protein with PDBid: 2db3_A
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.20 E-value=3.4e-10 Score=74.73 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=81.1
Q ss_pred CCCCCEEEHHHHHHHHHHHHHHHH----------CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE
Q ss_conf 489971105789999999876530----------4778234899999972789869997214432332243206758972
Q gi|254780130|r 66 ANAAPIIVAYHFNSDLARLQKAFP----------QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF 135 (205)
Q Consensus 66 ~~~~kviVf~~f~~~l~~l~~~~~----------~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~ 135 (205)
....+++||++-....+.+.+.|. ++....+|..+++.|.+|+.+||+++ .+++.|+|+. ..++||+|
T Consensus 298 ~~~~~~iIF~~t~~~a~~l~~~L~~~~~~~~~~h~~~~~~~R~~~l~~F~~g~~~ILvaT-d~~~rGlDip-~V~~VI~~ 375 (434)
T 2db3_A 298 EQADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIAT-SVASRGLDIK-NIKHVINY 375 (434)
T ss_dssp HCCTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEEC-GGGTSSCCCT-TCCEEEES
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC-CCCCCCCCCC-CCCEEEEE
T ss_conf 467349999434187999999987412453322456789999999999875998799977-8531577721-49789996
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECC
Q ss_conf 689998880225555766654202657753999998388
Q gi|254780130|r 136 SLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQN 174 (205)
Q Consensus 136 ~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~ 174 (205)
++|.|++.|.|..||. -|.|++.. .+.|++..
T Consensus 376 d~P~s~~~yihriGR~-----GR~g~~G~--ai~f~~~~ 407 (434)
T 2db3_A 376 DMPSKIDDYVHRIGRT-----GRVGNNGR--ATSFFDPE 407 (434)
T ss_dssp SCCSSHHHHHHHHTTS-----SCTTCCEE--EEEEECTT
T ss_pred CCCCCHHHHHHHCCCC-----CCCCCCEE--EEEEECCH
T ss_conf 9998989986432505-----47999538--99997717