HHsearch results for GI: 254780130 and protein with PDBid: 2v6i_A
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=97.42 E-value=0.0002 Score=42.82 Aligned_cols=99 Identities=9% Similarity=-0.002 Sum_probs=64.2
Q ss_pred CCCCEEEHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEE-----
Q ss_conf 899711057899999998765304778------234899999972789869997214432332243206758972-----
Q gi|254780130|r 67 NAAPIIVAYHFNSDLARLQKAFPQGRT------LDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFF----- 135 (205)
Q Consensus 67 ~~~kviVf~~f~~~l~~l~~~~~~~~~------~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~----- 135 (205)
.+.+++||++-..+.+.+.+.|.+... ..........|.+++.+|++++ .+++.|+|+ . ...||.+
T Consensus 170 ~~g~iLVFv~s~~~~~~la~~L~~~g~~v~~lhg~~~~~~~~~~~~~~~~ilVaT-~i~E~GI~i-d-v~~VId~g~~~~ 246 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNRKTFESEYPKCKSEKWDFVITT-DISEMGANF-K-ADRVIDPRKTIK 246 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEESTTTHHHHTTHHHHSCCSEEEEC-GGGGTSCCC-C-CSEEEECCEEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHCCCCEEEEEC-CHHHHCCCC-C-CEEEEECCCCCC
T ss_conf 4898799979899999999999868990999679999999998767997699978-769837244-8-608997786441
Q ss_pred ------------CCCCCHHHHHHHHHHHHHHHHHCCC-CCCCEEEEEEEEC
Q ss_conf ------------6899988802255557666542026-5775399999838
Q gi|254780130|r 136 ------------SLWWDLEEHQQMIERIGVTRQRQAG-FKRAVFVYYLIAQ 173 (205)
Q Consensus 136 ------------~~~~n~~~~~Qa~~Ri~~~r~hR~G-Q~~~v~v~~l~~~ 173 (205)
..|-|++...|..||. -|.+ +...+++|..-+.
T Consensus 247 ~~~~~~~~~~~~~~~is~as~~QR~GR~-----GR~~~g~~~~y~y~~~~~ 292 (431)
T 2v6i_A 247 PILLDGRVSMQGPIAITPASAAQRRGRI-----GRNPEKLGDIYAYSGNVS 292 (431)
T ss_dssp EEEETTEEEEEEEEECCHHHHHHHHTTS-----SCCTTCCCCEEEECSCCC
T ss_pred EEECCCCEEEEEEECCCHHHHHHHHHCC-----CCCCCCCCEEEEECCCCC
T ss_conf 2647999788524506899998543255-----879899615999777788