HHsearch results for GI: 254780130 and protein with PDBid: 2vsf_A
>2vsf_A XPD, DNA repair helicase RAD3 related protein; NER, TFIIH, hydrolase, ATP-binding, nucleotide-binding, iron sulfur cluster; HET: DNA; 2.9A {Thermoplasma acidophilum}
Probab=93.94 E-value=0.27 Score=25.52 Aligned_cols=82 Identities=12% Similarity=0.180 Sum_probs=50.4
Q ss_pred HHHHHHHHCCCCCEEEHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHH-HC
Q ss_conf 499998614899711057899999998765304-------7782348999999727898699972144323322432-06
Q gi|254780130|r 58 ALEVIIEKANAAPIIVAYHFNSDLARLQKAFPQ-------GRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQY-GG 129 (205)
Q Consensus 58 ~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~~~-------~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~-a~ 129 (205)
.+.+++...+|..+|.|+.|. .++.+...+.. +.....+...++.|..+...++++-..+..+|+||.. .+
T Consensus 421 ~i~~~~~~~~g~~LVlf~Sy~-~l~~~~~~l~~~~~~~~~~~~~~~~~~~l~~f~~~~~~~~~v~~~s~~EGiDl~g~~~ 499 (602)
T 2vsf_A 421 VIEDIILKVKKNTIVYFPSYS-LMDRVENRVSFEHMKEYRGIDQKELYSMLKKFRRDHGTIFAVSGGRLSEGINFPGNEL 499 (602)
T ss_dssp HHHHHHHHHCSCEEEEESSHH-HHHHHHHHCCSCCCCCCTTCCHHHHHHHHHHHHHSCCCEEEETTSGGGCC-----CCC
T ss_pred HHHHHHHHHCCCEEEEECCHH-HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCE
T ss_conf 999999985278299944399-9999999862655667515778889999999733798599995775023602799976
Q ss_pred CEEEEECCCCC
Q ss_conf 75897268999
Q gi|254780130|r 130 NILVFFSLWWD 140 (205)
Q Consensus 130 ~~vI~~~~~~n 140 (205)
..+|...+||-
T Consensus 500 ~~viI~~lPfp 510 (602)
T 2vsf_A 500 EMIILAGLPFP 510 (602)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEEEECCCC
T ss_conf 79999837999