HHsearch results for GI: 254780130 and protein with PDBid: 2zj8_A
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=97.90 E-value=3.2e-05 Score=47.21 Aligned_cols=82 Identities=15% Similarity=0.141 Sum_probs=60.6
Q ss_pred CCCCHHHHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHHCCEEEEECCC--------CCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 4778234899999972789869997214432332243206758972689--------99888022555576665420265
Q gi|254780130|r 90 QGRTLDKDPCTIQEWNEGKIPLLFAHPASCGHGLNLQYGGNILVFFSLW--------WDLEEHQQMIERIGVTRQRQAGF 161 (205)
Q Consensus 90 ~~~~~~~r~~~i~~f~~~~~~Vll~~~~a~g~GlnL~~a~~~vI~~~~~--------~n~~~~~Qa~~Ri~~~r~hR~GQ 161 (205)
++.+...|....+.|.+|+++|++++ .+.+.|+|+. +.+++|....+ .++..+.|..||. -|.|.
T Consensus 302 ~~l~~~eR~~ve~~f~~g~i~vlv~T-~~l~~Gvdlp-~~~vVI~~~~~~~~~~~~~~~~~~~~Q~~GRa-----gR~g~ 374 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKGIIKAVVAT-PTLSAGINTP-AFRVIIRDIWRYSDFGMERIPIIEVHQMLGRA-----GRPKY 374 (720)
T ss_dssp TTSCHHHHHHHHHHHHTTSSCEEEEC-STTGGGCCCC-BSEEEECCSEECCSSSCEECCHHHHHHHHTTB-----CCTTT
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEE-HHHHCCCCCC-CCEEEEEECCCCCCCCCCCCCHHHHHHHHHHH-----CCCCC
T ss_conf 89999999999999976998268861-3554278976-75399995887787677759999999899984-----77777
Q ss_pred CCCEEEEEEEECCCHHH
Q ss_conf 77539999983889589
Q gi|254780130|r 162 KRAVFVYYLIAQNTIDE 178 (205)
Q Consensus 162 ~~~v~v~~l~~~~tiEe 178 (205)
...-.++-+.+.+....
T Consensus 375 ~~~g~~ii~~~~~~~~~ 391 (720)
T 2zj8_A 375 DEVGEGIIVSTSDDPRE 391 (720)
T ss_dssp CSEEEEEEECSSSCHHH
T ss_pred CCCCEEEEEECCCCHHH
T ss_conf 88776999968976599