HHsearch results for GI: 254780130 and protein with PDBid: 3dmq_A

>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97  E-value=2.4e-31  Score=191.71  Aligned_cols=135  Identities=13%  Similarity=0.168  Sum_probs=117.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCCC-CCEEEECHH
Q ss_conf             057234334999986148997110578999999987653-----------04778234899999972789-869997214
Q gi|254780130|r   50 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPA  117 (205)
Q Consensus        50 ~~~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~~-~~Vll~~~~  117 (205)
                      ...++|+.++.+++.+..+.|++|||+|..+++.|...+           .++.+...|..+++.|++++ ..++++++.
T Consensus       485 ~~~~~k~~~l~~~l~~~~~~KvlIF~~~~~t~~~L~~~l~~~~~~~~~~~~g~~s~~eR~~~i~~F~~~~~~~~iList~  564 (968)
T 3dmq_A          485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE  564 (968)
T ss_dssp             TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred             HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf             32579999999998750698717998314899999999987369717885588888999999999860668842997133


Q ss_pred             HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf             4323322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r  118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI  190 (205)
Q Consensus       118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~  190 (205)
                      +||+|+|||. |+++|+||+||||..++|++||+     ||+||+++|.||+++++||+|+++++.+..|.+.
T Consensus       565 ag~eGlNLq~-a~~vI~~Dlpwnp~~~eQriGRi-----~RiGQ~~~v~i~~~~~~~t~e~~i~~~l~~k~~~  631 (968)
T 3dmq_A          565 IGSEGRNFQF-ASHMVMFDLPFNPDLLEQRIGRL-----DRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA  631 (968)
T ss_dssp             CTTCSSCCTT-CCEEECSSCCSSHHHHHHHHHTT-----SCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHH-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             0368878667-98899977998864899997305-----8779997079999850979999999999999999