HHsearch results for GI: 254780130 and protein with PDBid: 3dmq_A
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.97 E-value=2.4e-31 Score=191.71 Aligned_cols=135 Identities=13% Similarity=0.168 Sum_probs=117.0
Q ss_pred CCCHHHHHHHHHHHHHCCCCCEEEHHHHHHHHHHHHHHH-----------HCCCCHHHHHHHHHHHHCCC-CCEEEECHH
Q ss_conf 057234334999986148997110578999999987653-----------04778234899999972789-869997214
Q gi|254780130|r 50 EVHDEKIKALEVIIEKANAAPIIVAYHFNSDLARLQKAF-----------PQGRTLDKDPCTIQEWNEGK-IPLLFAHPA 117 (205)
Q Consensus 50 ~~~~~Kl~~l~~ii~~~~~~kviVf~~f~~~l~~l~~~~-----------~~~~~~~~r~~~i~~f~~~~-~~Vll~~~~ 117 (205)
...++|+.++.+++.+..+.|++|||+|..+++.|...+ .++.+...|..+++.|++++ ..++++++.
T Consensus 485 ~~~~~k~~~l~~~l~~~~~~KvlIF~~~~~t~~~L~~~l~~~~~~~~~~~~g~~s~~eR~~~i~~F~~~~~~~~iList~ 564 (968)
T 3dmq_A 485 WNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE 564 (968)
T ss_dssp TTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC
T ss_pred HHHHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 32579999999998750698717998314899999999987369717885588888999999999860668842997133
Q ss_pred HHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Q ss_conf 4323322432067589726899988802255557666542026577539999983889589999999999999
Q gi|254780130|r 118 SCGHGLNLQYGGNILVFFSLWWDLEEHQQMIERIGVTRQRQAGFKRAVFVYYLIAQNTIDELVLQRLRTKSTI 190 (205)
Q Consensus 118 a~g~GlnL~~a~~~vI~~~~~~n~~~~~Qa~~Ri~~~r~hR~GQ~~~v~v~~l~~~~tiEe~i~~~l~~K~~~ 190 (205)
+||+|+|||. |+++|+||+||||..++|++||+ ||+||+++|.||+++++||+|+++++.+..|.+.
T Consensus 565 ag~eGlNLq~-a~~vI~~Dlpwnp~~~eQriGRi-----~RiGQ~~~v~i~~~~~~~t~e~~i~~~l~~k~~~ 631 (968)
T 3dmq_A 565 IGSEGRNFQF-ASHMVMFDLPFNPDLLEQRIGRL-----DRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDA 631 (968)
T ss_dssp CTTCSSCCTT-CCEEECSSCCSSHHHHHHHHHTT-----SCSSSCSCCEEEEEEETTSHHHHHHHHHHHTTCC
T ss_pred CCCCCCCHHH-CCEEEEECCCCCHHHHHHHHHCC-----CCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 0368878667-98899977998864899997305-----8779997079999850979999999999999999